Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g1399 | ATGTCAGCTATGGGGGACATTTCATTAGAAGATGTCAAGAATGAGAACATTGATCTAGAAAGAATTCCTGTTGAGGAAGTTTTTGAGCAACTAAAATGTACAAAAGAAGGATTGAGTACAGCAGAAGGAGAAAAAAGGCTCCAAATTTTTGGCCCTAATAAGCTTGAAGAGAAAAAAGAGAGCAAAGTTTTGAAGTTTTTGGGGTTTATGTGGAACCCTCTTTCATGGGTCATGGAATCTGCGGCAATCATGGCCATTGTCTTGGCCAATGGAGGGGGGAAACCACCAGATTGGCAAGATTTTGTTGGTATCATTGTCTTGTTGATCATCAACTCTACCATCAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGTCTTGCCCCCAAAACCAAGGTCCTAAGAGATGGAAAGTGGAAAGAAGAGGAGGCAGCAATTCTAGTTCCAGGAGATGTGATTAGTGTCAAATTGGGAGATATTATCCCAGCTGATGCACGTCTCTTAGAAGGCGATCCTCTTAAGATTGATCAATCTGCTCTTACAGGTGAATCTTTGCCAGTCACCAAGCATCCTGGTGATGAAGTGTTCTCTGGCTCCACTTGCAAGCAAGGTGAGATTGAGGCCGTAGTTATTGCCACTGGTGTGCATACTTTCTTTGGAAAGGCAGCTCACCTTGTGGATAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACGGCCATTGGAAACTTCTGTATATGCTCGATCGCGATAGGGATGATCATTGAGATCTTGGTAATGTATCCAATCCAGCATAGGGCATACAGAGAGGGAATTGACAACTTGTTGGTGCTCCTCATTGGAGGTATTCCCATTGCAATGCCAACAGTTCTGTCAGTAACAATGGCCATCGGATCGCATCGCCTTTCACAACAAGGTGCCATTACTAAGAGGATGACTGCAATTGAAGAGATGGCTGGGATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTCACCCTCAACAAGCTCACAGTCGACAAGTCCTTGATTGAGGTGTTTGTGCCAAACATGGACAAAGACACTGTTATGTTGTTTGCTGCAAGAGCTTCTAGAGTTGAAAATCAAGATGCCATTGATGCATGTATTGTTGGAATGTTGGGTGACCCTAAAGAGGCAAGAGCAGGAATAACTGAAGTACATTTCTTGCCTTTCAATCCTGTCGATAAACGTACTGCCATTACCTACATTGACAGAGATGGTAACTGGCACAGAAGCAGCAAGGGTGCTCCTGAACAGATAATTGACCTTTGTGAGCTTAAAGGAGAAATAAGAAAGAAAGCTCATGACATTATCGATAACTATGCTAACCGCGGTCTTCGTTCCTTGGCAGTTGGTCGACAGACTGTTAAAGATAAGGACAAAGAAAGTGCTGGAGAACCATGGGAATTTGTTGGTCTCTTGCCCCTATTTGATCCTCCAAGGCATGATAGTGCAGAAACCATTCGCCGAGCTCTTGAACTCGGTGTTAATGTTAAGATGATCACAGGTGACCAACTTGCAATAGGAAAAGAAACTGGTCGAAGGCTCGGCATGGGCACTAACATGTATCCATCATCGTCTTTGCTCGGCCAATGCAAGGATGAGTCAATTGCTTCCATTCCTGTTGATGAACTCATTGAGAAGGCTGATGGGTTTGCAGGAGTCTTCCCTGAACACAAGTATGAGATTGTCAAGAAACTTCAGGAGAGGAATCATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCTGCTCTCAAGAAGGCCGACATCGGTATTGCTGTGGCTGATGCAACTGATGCAGCAAGAAGTGCTTCAGACATTGTCTTGACAGAGCCAGGGCTAAGTGTGATTGTGAGTGCTGTATTGACCAGTAGGGCCATCTTTCAGAGAATGAAGAACTATACTATCTATGCAGTTTCCATTACAATTCGTATTGTGTTGGGATTCATGCTTGTTGCTCTCATCTGGAAGTTCGATTTCTCACCTTTTATGGTCTTGATCATTGCCATCCTAAACGATGGGACCATCATGACCATTTCAAAGGATAGGGTCAAGCCATCACCAGTGCCAGACTCATGGAAACTCAAAGAAATTTTTGCTACTGGTGTTGTCCTTGGAACATACATGGCCCTCATGACCGTCTTTTTCTTTTGGCTCGCCAACGAAACCGACTTCTTCACGAACACATTTGGTGTAAAGCCACTCAAAGATCTTGCTGAGATCAATTCTGCTCTTTATCTTCAAGTGAGCATCATCAGTCAAGCTCTCATCTTTGTCACCAGGTCAAGAAGTTGGTCTTTTGTTGAATGCCCTGGTCTCTTGTTAGTTATTGCCTTCATTGCTGCACAGTTGGTTGCCACTTTAATTGCTGTATATTCTGAATGGGACTTTGCAAGGATCAGAGGTATTGGATGGGGATGGGCCGGAGCTATCTGGGTATTCAGTATTGTTACTTACTTCCCACTAGATGTTCTCAAATTCGGAATTCGATATGCTCTTAGCGGCAAGGCTTGGGACAACATGCTTGAGAATAAGACGGCGTTTACGACTAAGAAGGATTATGGAAAAGGCGAAAGAGAGGCACAATGGGCAATAGCACAACGTACAATGCACGGACTACAACCACCAGAAACCATATTTCATGAAAAGAGCAACTATGAAGAGCTTTCAGAGATTGCAGAGCAAGCCAAGAAAAGGGCTGAAGTTGCTAGGTTGAGGGAACTTCACACTCTAAAGGGTCATGTGGAGTCAGTAGTGAAGTTGAAGGGATTGGACATTGAGACTATCCAACAACACTACACTGTTTAA | 2856 | 44.01 | MSAMGDISLEDVKNENIDLERIPVEEVFEQLKCTKEGLSTAEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMIIEILVMYPIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVPNMDKDTVMLFAARASRVENQDAIDACIVGMLGDPKEARAGITEVHFLPFNPVDKRTAITYIDRDGNWHRSSKGAPEQIIDLCELKGEIRKKAHDIIDNYANRGLRSLAVGRQTVKDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQCKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERNHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGVVLGTYMALMTVFFFWLANETDFFTNTFGVKPLKDLAEINSALYLQVSIISQALIFVTRSRSWSFVECPGLLLVIAFIAAQLVATLIAVYSEWDFARIRGIGWGWAGAIWVFSIVTYFPLDVLKFGIRYALSGKAWDNMLENKTAFTTKKDYGKGEREAQWAIAQRTMHGLQPPETIFHEKSNYEELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV | 951 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 24452780 | 24457460 | - | CcPI632755_06g013990.1 | Cco06g1399 | 181999 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g1399 | 951 | Gene3D | - | 97 | 817 | - | - | |
| Cco06g1399 | 951 | SUPERFAMILY | Calcium ATPase, transduction domain A | 135 | 232 | IPR008250 | - | |
| Cco06g1399 | 951 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 334 | 340 | IPR018303 | - | |
| Cco06g1399 | 951 | FunFam | Plasma membrane ATPase | 135 | 219 | - | - | |
| Cco06g1399 | 951 | SMART | Cation_ATPase_N_a_2 | 18 | 90 | IPR004014 | - | |
| Cco06g1399 | 951 | Gene3D | - | 900 | 951 | - | - | |
| Cco06g1399 | 951 | Pfam | haloacid dehalogenase-like hydrolase | 328 | 605 | - | - | |
| Cco06g1399 | 951 | FunFam | Plasma membrane ATPase | 484 | 639 | - | - | |
| Cco06g1399 | 951 | Pfam | Cation transporter/ATPase, N-terminus | 21 | 84 | IPR004014 | - | |
| Cco06g1399 | 951 | CDD | P-type_ATPase_H | 37 | 843 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cco06g1399 | 951 | Gene3D | - | 344 | 491 | IPR023299 | GO:0000166(InterPro) | |
| Cco06g1399 | 951 | FunFam | ATPase 4 plasma membrane-type | 577 | 817 | - | - | |
| Cco06g1399 | 951 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 37 | 808 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cco06g1399 | 951 | SFLD | p-type atpase | 314 | 643 | IPR044492 | - | |
| Cco06g1399 | 951 | Gene3D | - | 135 | 219 | - | - | |
| Cco06g1399 | 951 | Coils | Coil | 899 | 922 | - | - | |
| Cco06g1399 | 951 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 20 | 877 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cco06g1399 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 508 | 518 | - | - | |
| Cco06g1399 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 332 | 346 | - | - | |
| Cco06g1399 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 591 | 610 | - | - | |
| Cco06g1399 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 182 | 196 | - | - | |
| Cco06g1399 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 486 | 497 | - | - | |
| Cco06g1399 | 951 | PRINTS | P-type cation-transporting ATPase superfamily signature | 614 | 626 | - | - | |
| Cco06g1399 | 951 | Gene3D | - | 329 | 628 | IPR023214 | - | |
| Cco06g1399 | 951 | NCBIfam | HAD-IC family P-type ATPase | 566 | 678 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1399 | 951 | NCBIfam | HAD-IC family P-type ATPase | 104 | 352 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1399 | 951 | SFLD | C1.7: P-type atpase like | 314 | 643 | - | - | |
| Cco06g1399 | 951 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 849 | IPR023298 | - | |
| Cco06g1399 | 951 | SUPERFAMILY | HAD-like | 328 | 638 | IPR036412 | - | |
| Cco06g1399 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 762 | 783 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1399 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 448 | 466 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1399 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 622 | 647 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1399 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 591 | 607 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1399 | 951 | PRINTS | H+-transporting ATPase (proton pump) signature | 563 | 579 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco06g1399 | 951 | Pfam | E1-E2 ATPase | 134 | 311 | - | - | |
| Cco06g1399 | 951 | FunFam | Plasma membrane ATPase | 344 | 491 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g1399 | Cco-Chr6:24452780 | Cco07g1321 | Cco-Chr7:27289592 | 0.00E+00 | dispersed | |
| Cco11g0379 | Cco-Chr11:3782865 | Cco06g1399 | Cco-Chr6:24452780 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g1399 | K01535 | - | csv:101214655 | 1789.24 |