Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1405 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAACGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCACTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAATAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATCGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCTGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAACCTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACAACTTCTTTGACCCCCAATGAAGCTTATTCCAACGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGGCCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAAAGACGTGCAATGCCAGGCAGGGGTAGTTGGCAGCGTTATTCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCTCTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGAGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACATAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATGATGAAACGGGAACAAAATGAAATACCAGAAATGAATGGAGAATTTGGATTTGATCATTTCTCTCTAGGATCATGTCCTTCTTTCAACTTACCTGACCAAGTTCTTAAGCAGAAGTTCTTAATAAGAACAGGACGAATTCTCCATCAAGGAAAGCTCCCCTGTCTTCAATCTCTGTATGAGGTGAGGAAAGATTGGAGCTTGAGGGTTACATCGAGGAGATATGAAATAGCTCCAATTTCGTCGAGAGAGTAG 2268 43.65 MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSTYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTTSLTPNEAYSNDQLHAMNSSISSGPSTIGNISVDFSSRSAVSAPLLDSKDVQCQAGVVGSVIQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQSYNQNGLVCDRKVGSSLIVPSSAAPLSFPQHSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSMMKREQNEIPEMNGEFGFDHFSLGSCPSFNLPDQVLKQKFLIRTGRILHQGKLPCLQSLYEVRKDWSLRVTSRRYEIAPISSRE 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24515754 24520029 + CcPI632755_06g014050.1 Cco06g1405 182005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1405 755 PIRSF RR_ARR_type-B 1 697 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cco06g1405 755 CDD REC_typeB_ARR-like 26 140 - -
Cco06g1405 755 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 366 IPR045279 GO:0009736(InterPro)
Cco06g1405 755 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cco06g1405 755 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cco06g1405 755 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Cco06g1405 755 Gene3D - 24 181 - -
Cco06g1405 755 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Cco06g1405 755 MobiDBLite consensus disorder prediction 157 178 - -
Cco06g1405 755 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cco06g1405 755 MobiDBLite consensus disorder prediction 147 208 - -
Cco06g1405 755 FunFam Two-component response regulator 207 270 - -
Cco06g1405 755 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cco06g1405 755 Gene3D - 207 270 - -
Cco06g1405 755 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Cco06g1405 755 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0479 Cco-Chr6:5285837 Cco06g1405 Cco-Chr6:24515754 1.50E-81 dispersed
Cco06g1405 Cco-Chr6:24515754 Cco08g1918 Cco-Chr8:30151572 4.20E-71 dispersed
Cco01g0009 Cco-Chr1:62979 Cco06g1405 Cco-Chr6:24515754 5.90E-19 transposed
Cco01g1797 Cco-Chr1:30671175 Cco06g1405 Cco-Chr6:24515754 3.10E-16 transposed
Cco04g1069 Cco-Chr4:26178465 Cco06g1405 Cco-Chr6:24515754 7.30E-18 transposed
Cco11g0371 Cco-Chr11:3717960 Cco06g1405 Cco-Chr6:24515754 1.10E-153 wgd
Cco05g1878 Cco-Chr5:27815117 Cco06g1405 Cco-Chr6:24515754 4.30E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59511 PF00072 Response_reg 1.90E-25 CL0304 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1405 K14491 - csv:101213687 1259.59