Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1413 | ATGCAGCCCTGTAGCAGAGAAATGCAAACCCTCAACTCTCTCTTAAACCACGCCCAAATCTCCCTCCAAGACCTCCACGCCGACCCCCACCACCACCACAACCACCATTTGAATCCCCCACCGCCGCAGATCCCGCCGTCTCACCTCCATCATTTCGATCCCGCCGCCGCCGCTTCCCACGACGACTTTCTCGACCAAATGCTCAACACAATCCCTTCCTGTTCCTGGCCTGACCTCAACCCTTCAAACCCTAAGTCCCCTTGGGACCTTAACCCCATCAATAAGCCCTCTAGAGATATCTCCGACGATCCTCATCAGAATCACATCACTGCCACATCTCCCGCCGCCAAAGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCCGGTTCTACCGGAAATGGCGTCGCGGACCATGGCCTCCCTCCTATGCCTCTCTCCCTTGGAAATGCTGACTTGGACCGCTCCCAAAACGACGTTGTCGATGGATCCTGCTTCCGCCCACCCAACTCGGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGCAAACGTGATGAATCAAACTCCCGGCGGTGGGTCTGCCGGAGTTTCTCAATCTCAGCCAAAGCAAAAGGTCAGAGCTCGCAGAGGCCAAGCCACTGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCGAACAAGACAGACAAAGCTTCAATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTACAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGGGGTGCAGCTGCTGTGGCTCCTCTCGTTGCTGACGTCTCCTCTGAGGGTGGCGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGCTGGCCGGAATTCAAACAACGGCAGCGGCGGAAACCAAACGGCGTCGTCCAACGACAGCATGACGGTGACGGAGCAGCAAGTGGCGAAGCTGATGGAGAAAGATATGGGATCGGCGATGCAATATTTGCAAGGAAAAGGGCTGTGTCTTATGCCGATCTCTCTGGCGACGGCCATTTCCACGTCCACGTGTCACTCCAGGAACCCCTTGATTAACGGCGGTAGTCAGCTTCCGGTGATTGGATCGAACGGCGAAGGGCCATCCTCGCCGAGCATGTCGGTGCTGACTGTGCAGTCGACGAGTATGGGGAACGGCTCCGTCAAAGACGCCGCCTCCGTTTCAAAGCCGTGA | 1269 | 55.79 | MQPCSREMQTLNSLLNHAQISLQDLHADPHHHHNHHLNPPPPQIPPSHLHHFDPAAAASHDDFLDQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHITATSPAAKAAVMLQQQLLLSRGMSGSTGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPANVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGRNSNNGSGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLINGGSQLPVIGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24602535 | 24605615 | + | CcPI632755_06g014130.1 | Cco06g1413 | 182013 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1413 | 422 | MobiDBLite | consensus disorder prediction | 295 | 330 | - | - | |
Cco06g1413 | 422 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 65 | 364 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cco06g1413 | 422 | SMART | finulus | 223 | 272 | IPR011598 | GO:0046983(InterPro) | |
Cco06g1413 | 422 | Gene3D | - | 211 | 274 | IPR036638 | GO:0046983(InterPro) | |
Cco06g1413 | 422 | MobiDBLite | consensus disorder prediction | 381 | 422 | - | - | |
Cco06g1413 | 422 | MobiDBLite | consensus disorder prediction | 173 | 212 | - | - | |
Cco06g1413 | 422 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 217 | 266 | IPR011598 | GO:0046983(InterPro) | |
Cco06g1413 | 422 | MobiDBLite | consensus disorder prediction | 304 | 330 | - | - | |
Cco06g1413 | 422 | MobiDBLite | consensus disorder prediction | 28 | 53 | - | - | |
Cco06g1413 | 422 | MobiDBLite | consensus disorder prediction | 168 | 220 | - | - | |
Cco06g1413 | 422 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 215 | 277 | IPR036638 | GO:0046983(InterPro) | |
Cco06g1413 | 422 | FunFam | Transcription factor bHLH66 | 214 | 279 | - | - | |
Cco06g1413 | 422 | Pfam | Helix-loop-helix DNA-binding domain | 222 | 267 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1413 | Cco-Chr6:24602535 | Cco09g0721 | Cco-Chr9:6541372 | 1.20E-46 | dispersed | |
Cco06g1413 | Cco-Chr6:24602535 | Cco02g1832 | Cco-Chr2:31226410 | 1.50E-81 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59512 | PF00010 | HLH | 1.60E-09 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1413 | - | - | - | 0.0 |