Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1413 ATGCAGCCCTGTAGCAGAGAAATGCAAACCCTCAACTCTCTCTTAAACCACGCCCAAATCTCCCTCCAAGACCTCCACGCCGACCCCCACCACCACCACAACCACCATTTGAATCCCCCACCGCCGCAGATCCCGCCGTCTCACCTCCATCATTTCGATCCCGCCGCCGCCGCTTCCCACGACGACTTTCTCGACCAAATGCTCAACACAATCCCTTCCTGTTCCTGGCCTGACCTCAACCCTTCAAACCCTAAGTCCCCTTGGGACCTTAACCCCATCAATAAGCCCTCTAGAGATATCTCCGACGATCCTCATCAGAATCACATCACTGCCACATCTCCCGCCGCCAAAGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCCGGTTCTACCGGAAATGGCGTCGCGGACCATGGCCTCCCTCCTATGCCTCTCTCCCTTGGAAATGCTGACTTGGACCGCTCCCAAAACGACGTTGTCGATGGATCCTGCTTCCGCCCACCCAACTCGGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGCAAACGTGATGAATCAAACTCCCGGCGGTGGGTCTGCCGGAGTTTCTCAATCTCAGCCAAAGCAAAAGGTCAGAGCTCGCAGAGGCCAAGCCACTGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCGAACAAGACAGACAAAGCTTCAATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTACAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGGGGTGCAGCTGCTGTGGCTCCTCTCGTTGCTGACGTCTCCTCTGAGGGTGGCGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGCTGGCCGGAATTCAAACAACGGCAGCGGCGGAAACCAAACGGCGTCGTCCAACGACAGCATGACGGTGACGGAGCAGCAAGTGGCGAAGCTGATGGAGAAAGATATGGGATCGGCGATGCAATATTTGCAAGGAAAAGGGCTGTGTCTTATGCCGATCTCTCTGGCGACGGCCATTTCCACGTCCACGTGTCACTCCAGGAACCCCTTGATTAACGGCGGTAGTCAGCTTCCGGTGATTGGATCGAACGGCGAAGGGCCATCCTCGCCGAGCATGTCGGTGCTGACTGTGCAGTCGACGAGTATGGGGAACGGCTCCGTCAAAGACGCCGCCTCCGTTTCAAAGCCGTGA 1269 55.79 MQPCSREMQTLNSLLNHAQISLQDLHADPHHHHNHHLNPPPPQIPPSHLHHFDPAAAASHDDFLDQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHITATSPAAKAAVMLQQQLLLSRGMSGSTGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPANVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGRNSNNGSGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLINGGSQLPVIGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24602535 24605615 + CcPI632755_06g014130.1 Cco06g1413 182013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1413 422 MobiDBLite consensus disorder prediction 295 330 - -
Cco06g1413 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 364 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco06g1413 422 SMART finulus 223 272 IPR011598 GO:0046983(InterPro)
Cco06g1413 422 Gene3D - 211 274 IPR036638 GO:0046983(InterPro)
Cco06g1413 422 MobiDBLite consensus disorder prediction 381 422 - -
Cco06g1413 422 MobiDBLite consensus disorder prediction 173 212 - -
Cco06g1413 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983(InterPro)
Cco06g1413 422 MobiDBLite consensus disorder prediction 304 330 - -
Cco06g1413 422 MobiDBLite consensus disorder prediction 28 53 - -
Cco06g1413 422 MobiDBLite consensus disorder prediction 168 220 - -
Cco06g1413 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 277 IPR036638 GO:0046983(InterPro)
Cco06g1413 422 FunFam Transcription factor bHLH66 214 279 - -
Cco06g1413 422 Pfam Helix-loop-helix DNA-binding domain 222 267 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1413 Cco-Chr6:24602535 Cco09g0721 Cco-Chr9:6541372 1.20E-46 dispersed
Cco06g1413 Cco-Chr6:24602535 Cco02g1832 Cco-Chr2:31226410 1.50E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59512 PF00010 HLH 1.60E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1413 - - - 0.0