Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1417 | ATGGAAGTTGATTCACCCAGCAACCCACCATGGGAAGCCTATAATTTTAAGTCTGATGGAACTCTGTCCTGGGTTGGAACCATCATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGTAATTGGAGAAGCTTTAGATTCGAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCGATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAAAAATTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATGTGGAACATGCAGATGATGATCGGGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGACACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTAGAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAAGAAGTTGATGAATCGGTGTCGCCTAAGCATGTAGACGATGAATTAAAAGATGACCGCGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA | 1104 | 42.03 | MEVDSPSNPPWEAYNFKSDGTLSWVGTIMKQELSSTISKTRVNVIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKFYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENVEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSRTTFCVVDVKNRDNGGSLVENETTCSELQLDLRLEEVDESVSPKHVDDELKDDREVKGFKLFGVHIK | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24673747 | 24678127 | + | CcPI632755_06g014170.1 | Cco06g1417 | 182017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1417 | 367 | SUPERFAMILY | DNA-binding domain | 72 | 129 | IPR016177 | GO:0003677(InterPro) | |
Cco06g1417 | 367 | Gene3D | - | 190 | 316 | IPR015300 | - | |
Cco06g1417 | 367 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 72 | 365 | IPR044800 | GO:0003700(InterPro) | |
Cco06g1417 | 367 | CDD | B3_DNA | 194 | 306 | IPR003340 | GO:0003677(InterPro) | |
Cco06g1417 | 367 | ProSiteProfiles | AP2/ERF domain profile. | 73 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1417 | 367 | SMART | B3_2 | 195 | 310 | IPR003340 | GO:0003677(InterPro) | |
Cco06g1417 | 367 | ProSiteProfiles | B3 DNA-binding domain profile. | 195 | 312 | IPR003340 | GO:0003677(InterPro) | |
Cco06g1417 | 367 | SUPERFAMILY | DNA-binding pseudobarrel domain | 194 | 294 | IPR015300 | - | |
Cco06g1417 | 367 | SMART | rav1_2 | 73 | 134 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1417 | 367 | Gene3D | AP2/ERF domain | 72 | 129 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1417 | 367 | FunFam | AP2 domain-containing protein RAP2.8 | 72 | 129 | - | - | |
Cco06g1417 | 367 | CDD | AP2 | 72 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1417 | 367 | Pfam | B3 DNA binding domain | 195 | 294 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1420 | Cco-Chr3:28395296 | Cco06g1417 | Cco-Chr6:24673747 | 2.50E-82 | dispersed | |
Cco05g2568 | Cco-Chr5:33928450 | Cco06g1417 | Cco-Chr6:24673747 | 3.70E-46 | dispersed | |
Cco06g1417 | Cco-Chr6:24673747 | Cco10g1857 | Cco-Chr10:32196066 | 4.90E-25 | dispersed | |
Cco06g1417 | Cco-Chr6:24673747 | Cco01g0128 | Cco-Chr1:1127062 | 1.00E-22 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59513 | PF02362 | B3 | 1.20E-23 | CL0405 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1417 | K09287 | - | csv:101212246 | 628.246 |