Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1417 ATGGAAGTTGATTCACCCAGCAACCCACCATGGGAAGCCTATAATTTTAAGTCTGATGGAACTCTGTCCTGGGTTGGAACCATCATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGTAATTGGAGAAGCTTTAGATTCGAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCGATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAAAAATTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATGTGGAACATGCAGATGATGATCGGGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGACACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTAGAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAAGAAGTTGATGAATCGGTGTCGCCTAAGCATGTAGACGATGAATTAAAAGATGACCGCGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1104 42.03 MEVDSPSNPPWEAYNFKSDGTLSWVGTIMKQELSSTISKTRVNVIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKFYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENVEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSRTTFCVVDVKNRDNGGSLVENETTCSELQLDLRLEEVDESVSPKHVDDELKDDREVKGFKLFGVHIK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24673747 24678127 + CcPI632755_06g014170.1 Cco06g1417 182017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1417 367 SUPERFAMILY DNA-binding domain 72 129 IPR016177 GO:0003677(InterPro)
Cco06g1417 367 Gene3D - 190 316 IPR015300 -
Cco06g1417 367 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 72 365 IPR044800 GO:0003700(InterPro)
Cco06g1417 367 CDD B3_DNA 194 306 IPR003340 GO:0003677(InterPro)
Cco06g1417 367 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1417 367 SMART B3_2 195 310 IPR003340 GO:0003677(InterPro)
Cco06g1417 367 ProSiteProfiles B3 DNA-binding domain profile. 195 312 IPR003340 GO:0003677(InterPro)
Cco06g1417 367 SUPERFAMILY DNA-binding pseudobarrel domain 194 294 IPR015300 -
Cco06g1417 367 SMART rav1_2 73 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1417 367 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1417 367 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Cco06g1417 367 CDD AP2 72 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1417 367 Pfam B3 DNA binding domain 195 294 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1417 K09287 - - csv:101212246 628.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1420 Cco-Chr3:28395296 Cco06g1417 Cco-Chr6:24673747 2.50E-82 dispersed
Cco05g2568 Cco-Chr5:33928450 Cco06g1417 Cco-Chr6:24673747 3.70E-46 dispersed
Cco06g1417 Cco-Chr6:24673747 Cco10g1857 Cco-Chr10:32196066 4.90E-25 dispersed
Cco06g1417 Cco-Chr6:24673747 Cco01g0128 Cco-Chr1:1127062 1.00E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1857 . 41 156 RAV Transcription Factor Family AT2G36080 75.9 9.7e-48 186.8
Cco06g0234 . 78 193 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cco01g0128 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cco07g0865 . 68 179 RAV Transcription Factor Family AT2G36080 69.2 1.7e-39 159.5
Cco05g2568 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.1e-38 154.8
Cco01g0128 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cco07g0865 . 71 312 RAV Transcription Factor Family AT2G46870 50.8 5.0e-55 211.8
Cco06g0234 . 73 323 RAV Transcription Factor Family AT2G46870 50.8 1.6e-53 206.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cco10g1857 . 36 152 RAV Transcription Factor Family AT2G46870 66.7 3.3e-38 156.0
Cco10g1857 . 34 163 RAV Transcription Factor Family AT3G11580 65.2 6.6e-44 174.5
Cco06g0234 . 80 200 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cco01g0128 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cco07g0865 . 71 179 RAV Transcription Factor Family AT3G11580 63.9 1.9e-38 156.4
Cco01g0128 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cco07g0865 . 70 309 RAV Transcription Factor Family AT3G61970 50.8 1.9e-51 199.9
Cco06g0234 . 81 315 RAV Transcription Factor Family AT3G61970 51.3 4.7e-50 195.3
Cco05g2568 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cco01g0128 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cco07g0865 . 72 179 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cco10g1857 . 41 240 RAV Transcription Factor Family AT5G06250 53.0 2.7e-49 192.6
Cco06g0234 . 83 193 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cco06g1417 . 73 367 RAV Transcription Factor Family AT1G50680 52.5 8.7e-85 310.8
Cco03g1420 . 47 328 RAV Transcription Factor Family AT1G50680 54.2 4.2e-79 292.0
Cco06g1417 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 4.5e-84 308.5
Cco03g1420 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cco05g2568 . 1 347 RAV Transcription Factor Family AT1G13260 62.7 3.1e-106 382.1
Cco03g1000 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cco01g0128 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cco10g1857 . 41 153 RAV Transcription Factor Family AT1G13260 68.1 1.8e-37 153.7
Cco06g0234 . 79 193 RAV Transcription Factor Family AT1G13260 66.4 2.4e-37 153.3
Cco05g2568 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 4.2e-100 361.7
Cco03g1000 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cco10g1857 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.1e-36 151.0
Cco05g2568 . 1 348 RAV Transcription Factor Family AT1G68840 61.6 9.6e-111 397.1
Cco03g1000 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cco10g1857 . 41 169 RAV Transcription Factor Family AT1G68840 63.8 7.5e-39 158.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cco06g0234 . 83 200 RAV Transcription Factor Family AT1G68840 63.3 1.8e-37 153.7
Cco05g2568 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 4.2e-100 361.7
Cco03g1000 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cco10g1857 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.1e-36 151.0
Cco06g1417 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 4.5e-84 308.5
Cco03g1420 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cco10g1857 . 34 163 RAV Transcription Factor Family AT3G11580 65.2 6.6e-44 174.5
Cco06g0234 . 80 200 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cco01g0128 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cco07g0865 . 71 179 RAV Transcription Factor Family AT3G11580 63.9 1.9e-38 156.4
Cco01g0128 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cco07g0865 . 72 179 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cco10g1857 . 41 156 RAV Transcription Factor Family AT2G36080 75.9 9.7e-48 186.8
Cco06g0234 . 78 193 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cco01g0128 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cco07g0865 . 68 179 RAV Transcription Factor Family AT2G36080 69.2 1.7e-39 159.5
Cco05g2568 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.1e-38 154.8
Cco10g1857 . 41 240 RAV Transcription Factor Family AT5G06250 53.0 2.7e-49 192.6
Cco06g0234 . 83 193 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cco01g0128 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cco07g0865 . 71 312 RAV Transcription Factor Family AT2G46870 50.8 5.0e-55 211.8
Cco06g0234 . 73 323 RAV Transcription Factor Family AT2G46870 50.8 1.6e-53 206.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cco10g1857 . 36 152 RAV Transcription Factor Family AT2G46870 66.7 3.3e-38 156.0
Cco06g1417 . 73 367 RAV Transcription Factor Family AT1G50680 52.5 8.7e-85 310.8
Cco03g1420 . 47 328 RAV Transcription Factor Family AT1G50680 54.2 4.2e-79 292.0
Cco01g0128 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cco07g0865 . 70 309 RAV Transcription Factor Family AT3G61970 50.8 1.9e-51 199.9
Cco06g0234 . 81 315 RAV Transcription Factor Family AT3G61970 51.3 4.7e-50 195.3
Cco05g2568 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cco05g2568 . 1 347 RAV Transcription Factor Family AT1G13260 62.7 3.1e-106 382.1
Cco03g1000 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cco01g0128 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cco10g1857 . 41 153 RAV Transcription Factor Family AT1G13260 68.1 1.8e-37 153.7
Cco06g0234 . 79 193 RAV Transcription Factor Family AT1G13260 66.4 2.4e-37 153.3
Cco05g2568 . 1 348 RAV Transcription Factor Family AT1G68840 61.6 9.6e-111 397.1
Cco03g1000 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cco10g1857 . 41 169 RAV Transcription Factor Family AT1G68840 63.8 7.5e-39 158.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cco06g0234 . 83 200 RAV Transcription Factor Family AT1G68840 63.3 1.8e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59513 PF02362 B3 1.20E-23 CL0405 Cco TF