Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1417 ATGGAAGTTGATTCACCCAGCAACCCACCATGGGAAGCCTATAATTTTAAGTCTGATGGAACTCTGTCCTGGGTTGGAACCATCATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGTAATTGGAGAAGCTTTAGATTCGAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCGATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAAAAATTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATGTGGAACATGCAGATGATGATCGGGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGACACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTAGAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAAGAAGTTGATGAATCGGTGTCGCCTAAGCATGTAGACGATGAATTAAAAGATGACCGCGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1104 42.03 MEVDSPSNPPWEAYNFKSDGTLSWVGTIMKQELSSTISKTRVNVIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKFYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENVEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSRTTFCVVDVKNRDNGGSLVENETTCSELQLDLRLEEVDESVSPKHVDDELKDDREVKGFKLFGVHIK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24673747 24678127 + CcPI632755_06g014170.1 Cco06g1417 182017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1417 367 SUPERFAMILY DNA-binding domain 72 129 IPR016177 GO:0003677(InterPro)
Cco06g1417 367 Gene3D - 190 316 IPR015300 -
Cco06g1417 367 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 72 365 IPR044800 GO:0003700(InterPro)
Cco06g1417 367 CDD B3_DNA 194 306 IPR003340 GO:0003677(InterPro)
Cco06g1417 367 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1417 367 SMART B3_2 195 310 IPR003340 GO:0003677(InterPro)
Cco06g1417 367 ProSiteProfiles B3 DNA-binding domain profile. 195 312 IPR003340 GO:0003677(InterPro)
Cco06g1417 367 SUPERFAMILY DNA-binding pseudobarrel domain 194 294 IPR015300 -
Cco06g1417 367 SMART rav1_2 73 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1417 367 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1417 367 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Cco06g1417 367 CDD AP2 72 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1417 367 Pfam B3 DNA binding domain 195 294 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1420 Cco-Chr3:28395296 Cco06g1417 Cco-Chr6:24673747 2.50E-82 dispersed
Cco05g2568 Cco-Chr5:33928450 Cco06g1417 Cco-Chr6:24673747 3.70E-46 dispersed
Cco06g1417 Cco-Chr6:24673747 Cco10g1857 Cco-Chr10:32196066 4.90E-25 dispersed
Cco06g1417 Cco-Chr6:24673747 Cco01g0128 Cco-Chr1:1127062 1.00E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59513 PF02362 B3 1.20E-23 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1417 K09287 - csv:101212246 628.246