Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1418 ATGGCGGAAAAGGACAGAGACGGTAATTCTGGCGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAACATTGTTGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGAGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGTCGAGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTACACACAACTTGTGGAACGCCGGCGTATGTTGCGCCGGAAGTTATCGGGAAGAAGGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTCGCGGGATTTCTTCCATTCCAGGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCATCGGAAGCCCGTCGACTAATCACCAAACTCCTGGATCCAAATCCGAGCACCAGAATTACAACTTCAAAGATCATGGAATCGTCCTGGTTCAAGAAATCTGTACCAAGGACTGTGGTGACGAAAGAGGAGCAAGAATTCAATGAGAGCAACGAGAAATTGAAGCAATCTGAAACATTGAACGCATTCCATATAATTTCTTTATCAGAAGGTTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTTGCGACGACGAGGCCAGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCAGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAGGGACAGGAGTGCGGAAGAAAAGGGAAACTAGCGGTGGCGGCGGAGATCTTCGCGGTGACGCCATCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGATACACTTGAATACAATCAGTTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGACATCGTGTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1293 48.96 MAEKDRDGNSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPSTRITTSKIMESSWFKKSVPRTVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24685348 24686640 - CcPI632755_06g014180.1 Cco06g1418 182018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1418 430 CDD CIPK_C 301 416 - -
Cco06g1418 430 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Cco06g1418 430 Pfam NAF domain 298 357 IPR004041 GO:0007165(InterPro)
Cco06g1418 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1418 430 FunFam Non-specific serine/threonine protein kinase 7 299 - -
Cco06g1418 430 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1418 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Cco06g1418 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cco06g1418 430 CDD STKc_SnRK3 16 270 - -
Cco06g1418 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco06g1418 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1418 430 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Cco06g1418 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165(InterPro)
Cco06g1418 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Cco06g1418 430 FunFam Non-specific serine/threonine protein kinase 295 420 - -
Cco06g1418 430 Coils Coil 280 300 - -
Cco06g1418 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Cco06g1418 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1831 Cco-Chr2:31197693 Cco06g1418 Cco-Chr6:24685348 6.30E-213 dispersed
Cco04g0826 Cco-Chr4:23749442 Cco06g1418 Cco-Chr6:24685348 2.90E-147 dispersed
Cco04g2163 Cco-Chr4:35364142 Cco06g1418 Cco-Chr6:24685348 3.90E-144 dispersed
Cco05g0552 Cco-Chr5:4434251 Cco06g1418 Cco-Chr6:24685348 8.40E-94 dispersed
Cco06g0422 Cco-Chr6:4602408 Cco06g1418 Cco-Chr6:24685348 6.10E-104 dispersed
Cco06g0671 Cco-Chr6:7434095 Cco06g1418 Cco-Chr6:24685348 2.40E-100 dispersed
Cco06g1297 Cco-Chr6:23194179 Cco06g1418 Cco-Chr6:24685348 4.10E-111 dispersed
Cco06g1418 Cco-Chr6:24685348 Cco10g1280 Cco-Chr10:25700627 7.50E-134 dispersed
Cco05g1869 Cco-Chr5:27617417 Cco06g1418 Cco-Chr6:24685348 3.60E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86929 PF00069 Pkinase 1.50E-73 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1418 - - - 0.0