Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1422 | ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTTGAGATCTGTGAAAGAGTCTATGTTTTTGATTGCTGTTTTACCACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCAAAGTCAGATGAGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGACAGGCTCCTCGTGAGCTTTTGCAGTTCTTGTCTCCTATGAATCCAGTTCCTTCTCAACTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCTAAAAGAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTGCTTGAGTGCATCACCTTGGATGATGACATGGACTTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGCGAAGAGATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTCTTCTCTGAGATGGATGCTGGAACTTGTACTGTCGCAAACGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAAATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCTCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACAATAATTCTCTTTGGAGTACACAAGTTAGTCCTTTACTTCAGTGTACAAGTCCTAGAAAACTTCCACAGAAATTCACATTGGAGAACAAAATTAAAAGCGTAGAGAAGGAAGAATCTACTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAGCAGGTGCCTCAATCTTCAGAGTCTTTTCCACTTACCTATGACATTTTACAAGATTCACCAAATTTAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTCATTGATTCTGATGGAGAAATAGATGTTCCTCATCTGAAAACTGCATCTTCATCTTTCCCGAATGCAGCAATGGTTTCTTCTCTTGCACCTGAATCTCTTCAGAATAAAAGTTTCTACACAGAAACAACCATACCATCACCTCCTCCTCTCCCCCAACTTTCCACAGATATTTCTGCTGCAAATTCTCTAGCTCCTTCTCCCCCTACTCCAACTGCATCACCACTTTCGTCAAGTAACTTTTCAACTCTAAGACCAGATAGATCTTCCCTCCCTGAGGACATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACCGTTGACCCTCCCCTGTCCGTAACCTCTGCAGTTAGTTCCTCAACACAGCCTCCTCCACCACCTCCTCCACCACCTCCTTCGACACCTCCTTTGAACGATACCGTAGCAGTTAGAGTTAAAGCTTCTCCGCCAACACCCCCTCCTTTTCCTTCAACATTTGCTTCCCATCCTACAATTGAATCCTTAGTGCCTCAACCACCACCACCTCCTCCTCCTCCTCCCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCGCCACCTCCTCCTCCAATGGCCCTTGTAGATCCTAAAATTTCCTCTCCAGTCCCTCCACCACCACCACCACCACCTCTTCCTATGACGTCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCACCACCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCTCCTGTTCCTCCACCGCCACCACCTCTTCCGTCTAGACAGGGAAGTACTTCAACATTTCCATCTGTCCCCCCTCCTCCACCGCCACCTGCTTCCACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATTGGGTGAACTGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAGGTCTTCCTCTCCTGTGCCAAGTAGTTCTCCATCAGCTATAAAGGGACGAAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGCGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAATAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTATAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTGGAGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCAGCTCTCAGGTCGCAGACCTCAAGAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAAGGAACAGCAAGGGGCTCTGCGATAGGATTTAGGCTGGACAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAGGTTCTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAAATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTTCGAATGGTTTTAAAGGAGTTCCTCCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAGGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCTCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGCGAAAAATCAAAGACTGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAACAACCCTGGCAGGTCGCGCTTTATCCTATTGTTGAATGTGCTGAACAGGCTACTTGTATCGAAACTGAACTAA | 3906 | 43.11 | MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDTWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLELQSQMSDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNIRTYKQAESELVKIDVNCHIQGDVVLECITLDDDMDFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDNNSLWSTQVSPLLQCTSPRKLPQKFTLENKIKSVEKEESTPTSKFSPDAAKTEQNYESDSVFQQVPQSSESFPLTYDILQDSPNLERSDRTSYSASVGSHSFIDSDGEIDVPHLKTASSSFPNAAMVSSLAPESLQNKSFYTETTIPSPPPLPQLSTDISAANSLAPSPPTPTASPLSSSNFSTLRPDRSSLPEDIEIYSKDQNQLSTVDPPLSVTSAVSSSTQPPPPPPPPPPSTPPLNDTVAVRVKASPPTPPPFPSTFASHPTIESLVPQPPPPPPPPPTSTVNRKISSPIPSPPPPPPPMALVDPKISSPVPPPPPPPPLPMTSKQVESTSTSPFVPPPPPPPPLPMTSRQVGSTSTSSPVPPPPPPLPSRQGSTSTFPSVPPPPPPPASTTSSSSPVPSAPPPPTLSGRGTSKLGELCPGSLLGNGSSRSSSPVPSSSPSAIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFSSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVNNPGRSRFILLLNVLNRLLVSKLN | 1301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24739804 | 24750470 | - | CcPI632755_06g014220.1 | Cco06g1422 | 182022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1422 | 1301 | SMART | PTEN_C2_2 | 197 | 337 | IPR014020 | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 737 | 752 | - | - | |
Cco06g1422 | 1301 | Gene3D | Formin, FH2 domain | 855 | 1240 | IPR042201 | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 541 | 859 | - | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 762 | 810 | - | - | |
Cco06g1422 | 1301 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 12 | 186 | IPR029021 | - | |
Cco06g1422 | 1301 | SMART | it6_source | 626 | 1300 | IPR015425 | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 443 | 464 | - | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 597 | 621 | - | - | |
Cco06g1422 | 1301 | PANTHER | FORMIN-J | 1 | 1254 | IPR051144 | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 669 | 727 | - | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 432 | 464 | - | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 828 | 859 | - | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 622 | 639 | - | - | |
Cco06g1422 | 1301 | Coils | Coil | 1230 | 1250 | - | - | |
Cco06g1422 | 1301 | Gene3D | - | 200 | 340 | - | - | |
Cco06g1422 | 1301 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 856 | 1255 | IPR015425 | - | |
Cco06g1422 | 1301 | PRINTS | Proline rich extensin signature | 562 | 578 | - | - | |
Cco06g1422 | 1301 | PRINTS | Proline rich extensin signature | 626 | 642 | - | - | |
Cco06g1422 | 1301 | PRINTS | Proline rich extensin signature | 648 | 665 | - | - | |
Cco06g1422 | 1301 | PRINTS | Proline rich extensin signature | 670 | 695 | - | - | |
Cco06g1422 | 1301 | PRINTS | Proline rich extensin signature | 541 | 553 | - | - | |
Cco06g1422 | 1301 | Gene3D | Protein tyrosine phosphatase superfamily | 15 | 199 | IPR029021 | - | |
Cco06g1422 | 1301 | Pfam | C2 domain of PTEN tumour-suppressor protein | 198 | 337 | IPR014020 | - | |
Cco06g1422 | 1301 | MobiDBLite | consensus disorder prediction | 1248 | 1267 | - | - | |
Cco06g1422 | 1301 | ProSiteProfiles | C2 tensin-type domain profile. | 199 | 338 | IPR014020 | - | |
Cco06g1422 | 1301 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 338 | IPR035892 | - | |
Cco06g1422 | 1301 | Pfam | Formin Homology 2 Domain | 863 | 1230 | IPR015425 | - | |
Cco06g1422 | 1301 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 869 | 1246 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1794 | Cco-Chr1:30651277 | Cco06g1422 | Cco-Chr6:24739804 | 1.20E-251 | dispersed | |
Cco06g1422 | Cco-Chr6:24739804 | Cco07g0234 | Cco-Chr7:2398977 | 4.60E-259 | dispersed | |
Cco05g1867 | Cco-Chr5:27576127 | Cco06g1422 | Cco-Chr6:24739804 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1422 | K28090 | - | csv:101221713 | 1966.04 |