Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1422 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTTGAGATCTGTGAAAGAGTCTATGTTTTTGATTGCTGTTTTACCACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCAAAGTCAGATGAGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGACAGGCTCCTCGTGAGCTTTTGCAGTTCTTGTCTCCTATGAATCCAGTTCCTTCTCAACTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCTAAAAGAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTGCTTGAGTGCATCACCTTGGATGATGACATGGACTTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGCGAAGAGATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTCTTCTCTGAGATGGATGCTGGAACTTGTACTGTCGCAAACGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAAATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCTCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACAATAATTCTCTTTGGAGTACACAAGTTAGTCCTTTACTTCAGTGTACAAGTCCTAGAAAACTTCCACAGAAATTCACATTGGAGAACAAAATTAAAAGCGTAGAGAAGGAAGAATCTACTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAGCAGGTGCCTCAATCTTCAGAGTCTTTTCCACTTACCTATGACATTTTACAAGATTCACCAAATTTAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTCATTGATTCTGATGGAGAAATAGATGTTCCTCATCTGAAAACTGCATCTTCATCTTTCCCGAATGCAGCAATGGTTTCTTCTCTTGCACCTGAATCTCTTCAGAATAAAAGTTTCTACACAGAAACAACCATACCATCACCTCCTCCTCTCCCCCAACTTTCCACAGATATTTCTGCTGCAAATTCTCTAGCTCCTTCTCCCCCTACTCCAACTGCATCACCACTTTCGTCAAGTAACTTTTCAACTCTAAGACCAGATAGATCTTCCCTCCCTGAGGACATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACCGTTGACCCTCCCCTGTCCGTAACCTCTGCAGTTAGTTCCTCAACACAGCCTCCTCCACCACCTCCTCCACCACCTCCTTCGACACCTCCTTTGAACGATACCGTAGCAGTTAGAGTTAAAGCTTCTCCGCCAACACCCCCTCCTTTTCCTTCAACATTTGCTTCCCATCCTACAATTGAATCCTTAGTGCCTCAACCACCACCACCTCCTCCTCCTCCTCCCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCGCCACCTCCTCCTCCAATGGCCCTTGTAGATCCTAAAATTTCCTCTCCAGTCCCTCCACCACCACCACCACCACCTCTTCCTATGACGTCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCACCACCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCTCCTGTTCCTCCACCGCCACCACCTCTTCCGTCTAGACAGGGAAGTACTTCAACATTTCCATCTGTCCCCCCTCCTCCACCGCCACCTGCTTCCACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATTGGGTGAACTGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAGGTCTTCCTCTCCTGTGCCAAGTAGTTCTCCATCAGCTATAAAGGGACGAAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGCGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAATAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTATAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTGGAGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCAGCTCTCAGGTCGCAGACCTCAAGAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAAGGAACAGCAAGGGGCTCTGCGATAGGATTTAGGCTGGACAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAGGTTCTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAAATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTTCGAATGGTTTTAAAGGAGTTCCTCCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAGGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCTCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGCGAAAAATCAAAGACTGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAACAACCCTGGCAGGTCGCGCTTTATCCTATTGTTGAATGTGCTGAACAGGCTACTTGTATCGAAACTGAACTAA 3906 43.11 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDTWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLELQSQMSDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNIRTYKQAESELVKIDVNCHIQGDVVLECITLDDDMDFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDNNSLWSTQVSPLLQCTSPRKLPQKFTLENKIKSVEKEESTPTSKFSPDAAKTEQNYESDSVFQQVPQSSESFPLTYDILQDSPNLERSDRTSYSASVGSHSFIDSDGEIDVPHLKTASSSFPNAAMVSSLAPESLQNKSFYTETTIPSPPPLPQLSTDISAANSLAPSPPTPTASPLSSSNFSTLRPDRSSLPEDIEIYSKDQNQLSTVDPPLSVTSAVSSSTQPPPPPPPPPPSTPPLNDTVAVRVKASPPTPPPFPSTFASHPTIESLVPQPPPPPPPPPTSTVNRKISSPIPSPPPPPPPMALVDPKISSPVPPPPPPPPLPMTSKQVESTSTSPFVPPPPPPPPLPMTSRQVGSTSTSSPVPPPPPPLPSRQGSTSTFPSVPPPPPPPASTTSSSSPVPSAPPPPTLSGRGTSKLGELCPGSLLGNGSSRSSSPVPSSSPSAIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFSSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVNNPGRSRFILLLNVLNRLLVSKLN 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24739804 24750470 - CcPI632755_06g014220.1 Cco06g1422 182022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1422 1301 SMART PTEN_C2_2 197 337 IPR014020 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 737 752 - -
Cco06g1422 1301 Gene3D Formin, FH2 domain 855 1240 IPR042201 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 541 859 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 762 810 - -
Cco06g1422 1301 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cco06g1422 1301 SMART it6_source 626 1300 IPR015425 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 443 464 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 597 621 - -
Cco06g1422 1301 PANTHER FORMIN-J 1 1254 IPR051144 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 669 727 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 432 464 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 828 859 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 622 639 - -
Cco06g1422 1301 Coils Coil 1230 1250 - -
Cco06g1422 1301 Gene3D - 200 340 - -
Cco06g1422 1301 ProSiteProfiles Formin homology-2 (FH2) domain profile. 856 1255 IPR015425 -
Cco06g1422 1301 PRINTS Proline rich extensin signature 562 578 - -
Cco06g1422 1301 PRINTS Proline rich extensin signature 626 642 - -
Cco06g1422 1301 PRINTS Proline rich extensin signature 648 665 - -
Cco06g1422 1301 PRINTS Proline rich extensin signature 670 695 - -
Cco06g1422 1301 PRINTS Proline rich extensin signature 541 553 - -
Cco06g1422 1301 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cco06g1422 1301 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 1248 1267 - -
Cco06g1422 1301 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cco06g1422 1301 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cco06g1422 1301 Pfam Formin Homology 2 Domain 863 1230 IPR015425 -
Cco06g1422 1301 SUPERFAMILY Formin homology 2 domain (FH2 domain) 869 1246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1794 Cco-Chr1:30651277 Cco06g1422 Cco-Chr6:24739804 1.20E-251 dispersed
Cco06g1422 Cco-Chr6:24739804 Cco07g0234 Cco-Chr7:2398977 4.60E-259 dispersed
Cco05g1867 Cco-Chr5:27576127 Cco06g1422 Cco-Chr6:24739804 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1422 K28090 - csv:101221713 1966.04