Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1422 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTTGAGATCTGTGAAAGAGTCTATGTTTTTGATTGCTGTTTTACCACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCAAAGTCAGATGAGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGACAGGCTCCTCGTGAGCTTTTGCAGTTCTTGTCTCCTATGAATCCAGTTCCTTCTCAACTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCTAAAAGAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTGCTTGAGTGCATCACCTTGGATGATGACATGGACTTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGCGAAGAGATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTCTTCTCTGAGATGGATGCTGGAACTTGTACTGTCGCAAACGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAAATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCTCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACAATAATTCTCTTTGGAGTACACAAGTTAGTCCTTTACTTCAGTGTACAAGTCCTAGAAAACTTCCACAGAAATTCACATTGGAGAACAAAATTAAAAGCGTAGAGAAGGAAGAATCTACTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAGCAGGTGCCTCAATCTTCAGAGTCTTTTCCACTTACCTATGACATTTTACAAGATTCACCAAATTTAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTCATTGATTCTGATGGAGAAATAGATGTTCCTCATCTGAAAACTGCATCTTCATCTTTCCCGAATGCAGCAATGGTTTCTTCTCTTGCACCTGAATCTCTTCAGAATAAAAGTTTCTACACAGAAACAACCATACCATCACCTCCTCCTCTCCCCCAACTTTCCACAGATATTTCTGCTGCAAATTCTCTAGCTCCTTCTCCCCCTACTCCAACTGCATCACCACTTTCGTCAAGTAACTTTTCAACTCTAAGACCAGATAGATCTTCCCTCCCTGAGGACATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACCGTTGACCCTCCCCTGTCCGTAACCTCTGCAGTTAGTTCCTCAACACAGCCTCCTCCACCACCTCCTCCACCACCTCCTTCGACACCTCCTTTGAACGATACCGTAGCAGTTAGAGTTAAAGCTTCTCCGCCAACACCCCCTCCTTTTCCTTCAACATTTGCTTCCCATCCTACAATTGAATCCTTAGTGCCTCAACCACCACCACCTCCTCCTCCTCCTCCCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCGCCACCTCCTCCTCCAATGGCCCTTGTAGATCCTAAAATTTCCTCTCCAGTCCCTCCACCACCACCACCACCACCTCTTCCTATGACGTCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCACCACCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCTCCTGTTCCTCCACCGCCACCACCTCTTCCGTCTAGACAGGGAAGTACTTCAACATTTCCATCTGTCCCCCCTCCTCCACCGCCACCTGCTTCCACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATTGGGTGAACTGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAGGTCTTCCTCTCCTGTGCCAAGTAGTTCTCCATCAGCTATAAAGGGACGAAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGCGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAATAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTATAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTGGAGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCAGCTCTCAGGTCGCAGACCTCAAGAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAAGGAACAGCAAGGGGCTCTGCGATAGGATTTAGGCTGGACAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAGGTTCTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAAATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTTCGAATGGTTTTAAAGGAGTTCCTCCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAGGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCTCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGCGAAAAATCAAAGACTGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAACAACCCTGGCAGGTCGCGCTTTATCCTATTGTTGAATGTGCTGAACAGGCTACTTGTATCGAAACTGAACTAA 3906 43.11 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDTWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLELQSQMSDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNIRTYKQAESELVKIDVNCHIQGDVVLECITLDDDMDFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDNNSLWSTQVSPLLQCTSPRKLPQKFTLENKIKSVEKEESTPTSKFSPDAAKTEQNYESDSVFQQVPQSSESFPLTYDILQDSPNLERSDRTSYSASVGSHSFIDSDGEIDVPHLKTASSSFPNAAMVSSLAPESLQNKSFYTETTIPSPPPLPQLSTDISAANSLAPSPPTPTASPLSSSNFSTLRPDRSSLPEDIEIYSKDQNQLSTVDPPLSVTSAVSSSTQPPPPPPPPPPSTPPLNDTVAVRVKASPPTPPPFPSTFASHPTIESLVPQPPPPPPPPPTSTVNRKISSPIPSPPPPPPPMALVDPKISSPVPPPPPPPPLPMTSKQVESTSTSPFVPPPPPPPPLPMTSRQVGSTSTSSPVPPPPPPLPSRQGSTSTFPSVPPPPPPPASTTSSSSPVPSAPPPPTLSGRGTSKLGELCPGSLLGNGSSRSSSPVPSSSPSAIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFSSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVNNPGRSRFILLLNVLNRLLVSKLN 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24739804 24750470 - CcPI632755_06g014220.1 Cco06g1422 182022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1422 1301 SMART PTEN_C2_2 197 337 IPR014020 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 737 752 - -
Cco06g1422 1301 Gene3D Formin, FH2 domain 855 1240 IPR042201 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 541 859 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 762 810 - -
Cco06g1422 1301 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cco06g1422 1301 SMART it6_source 626 1300 IPR015425 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 443 464 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 597 621 - -
Cco06g1422 1301 PANTHER FORMIN-J 1 1254 IPR051144 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 669 727 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 432 464 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 828 859 - -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 622 639 - -
Cco06g1422 1301 Coils Coil 1230 1250 - -
Cco06g1422 1301 Gene3D - 200 340 - -
Cco06g1422 1301 ProSiteProfiles Formin homology-2 (FH2) domain profile. 856 1255 IPR015425 -
Cco06g1422 1301 PRINTS Proline rich extensin signature 562 578 - -
Cco06g1422 1301 PRINTS Proline rich extensin signature 626 642 - -
Cco06g1422 1301 PRINTS Proline rich extensin signature 648 665 - -
Cco06g1422 1301 PRINTS Proline rich extensin signature 670 695 - -
Cco06g1422 1301 PRINTS Proline rich extensin signature 541 553 - -
Cco06g1422 1301 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cco06g1422 1301 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Cco06g1422 1301 MobiDBLite consensus disorder prediction 1248 1267 - -
Cco06g1422 1301 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cco06g1422 1301 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cco06g1422 1301 Pfam Formin Homology 2 Domain 863 1230 IPR015425 -
Cco06g1422 1301 SUPERFAMILY Formin homology 2 domain (FH2 domain) 869 1246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1422 K28090 - - csv:101221713 1966.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1794 Cco-Chr1:30651277 Cco06g1422 Cco-Chr6:24739804 1.20E-251 dispersed
Cco06g1422 Cco-Chr6:24739804 Cco07g0234 Cco-Chr7:2398977 4.60E-259 dispersed
Cco05g1867 Cco-Chr5:27576127 Cco06g1422 Cco-Chr6:24739804 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco09g1035 . 88 392 Protein tyrosine phosphatase (PTP) family AT1G71860 68.0 6.2e-123 437.6
Cco06g2033 . 170 1067 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1099.3
Cco06g0595 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-42 169.9
Cco09g2285 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cco05g2408 . 139 383 Protein tyrosine phosphatase (PTP) family AT3G52180 73.9 3.3e-109 391.7
Cco07g0514 . 10 269 Protein tyrosine phosphatase (PTP) family AT3G10940 66.5 5.7e-98 354.4
Cco10g1406 . 143 582 Protein tyrosine phosphatase (PTP) family AT3G01510 72.3 5.9e-198 687.2
Cco02g1936 . 96 297 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 1.5e-73 273.1
Cco09g1122 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cco03g1073 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.3e-55 210.7
Cco10g0247 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.5 6.6e-101 364.4
Cco11g0221 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cco11g0221 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.7e-45 179.5
Cco10g0247 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cco02g1936 . 130 298 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.9e-76 282.3
Cco09g1122 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 2.1e-70 262.3
Cco03g1073 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cco03g1073 . 7 195 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-77 284.6
Cco02g1936 . 121 293 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cco07g0302 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco02g0686 . 33 611 Protein tyrosine phosphatase (PTP) family AT3G19420 66.5 2.0e-220 762.3
Cco04g1461 . 75 650 Protein tyrosine phosphatase (PTP) family AT3G19420 60.9 1.2e-198 689.9
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco02g2353 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 4.0e-69 258.5
Cco10g0185 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.0 9.2e-110 393.7
Cco04g0913 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.0e-286 981.1
Cco04g0913 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 4.4e-258 887.5
Cco04g0913 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33