Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g1429 | ATGGCGGAGCGGGAAAGCTTCGAAACTGACCAACTCGGAAGCTCCAAGGCGGCTACTGCCGGGCAAGAGGATGATGAAGAAGACATGGAAGATTACGAGGATGAATCAGAGGTGGAATTGGAAGATGGAGGAGGAGGAGGAGGGAGTGAGTTGCAACCGACTGAGTTAAGAACCGGTTCGTGGGTTAGTGAAGCTGTGGTGAGGGGTTCACGTTCTGAAACCCTAACGGTGCCGTCTGCGAATCAATCTTCCGAGAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTGCTGTGCAGTCACTCGAAGGAGCTGAATTGAAGCAAGCTCCATCTTCCCGCAATGAGCCAAAGGCTGTTGAAGCAACCCAGACAGATAAGGTTCAAGAACAAAGCCAGCTTCAGGTGTCAACATTTAAGGGACCTGGTTCGGACCAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCCCAAAGTCCAAGTTTGTCTGAACATAAGCTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCGGAGCCAAGCCAGAAAAATTCCTCCAACCATAAAACTACATCATCTGTTCCGAATGTAAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAAAAGATCGAATGTTGCGATCACTCAGGCCATAGAACAGGGACTGTTTACAAGAGCGAACATAGCCACGATCCACCTAGGAAGATTAGTATCCCCAAGGAAAGTAAGCTCGTGCCATATGTTGAGCCTGTGGTTAAAAAAATCATTGCAGAACATTCCAAAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCCAAAGAACCTGTACGGGAAACAGCTATAGTCCTTGAAAGGAAACGACAGCACTCAAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGGCGATGGACCTGAAACAAAACAAAAAGTTAAGAAAAGCAGTGCGGGAAATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCCAAATTTGTGGTGCATGCAGCAGGTGATGTGGGAATCTCGGGTGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACCGATGTACTTCTGCTGGGTGTCCAGTCCGTAAACATATCGAATCAGCAGTAGAAAATCCAAATGCAGTAATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCAAAGAAACGACACGGTCCACCGAGTGCTCCTCTTGTAGCTGCTGCAGCGCCAGCCTCCATGAGCAATACGCAACCGAAGAAAACCAACGTGGTTGAGAGCCAAATCTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTCTGAGCATTGGATTTGAAATCAAGCCTTGCTGA | 1542 | 46.5 | MAERESFETDQLGSSKAATAGQEDDEEDMEDYEDESEVELEDGGGGGGSELQPTELRTGSWVSEAVVRGSRSETLTVPSANQSSENGRSDGLPVNSAVQSLEGAELKQAPSSRNEPKAVEATQTDKVQEQSQLQVSTFKGPGSDQSPTSVTQSISSSQSPSLSEHKLSPKKVQKECKPEPSQKNSSNHKTTSSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDHSGHRTGTVYKSEHSHDPPRKISIPKESKLVPYVEPVVKKIIAEHSKRVINDSDPPTPSKEPVRETAIVLERKRQHSSDSDGNDEFKIKDENGDGPETKQKVKKSSAGNSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNTQPKKTNVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC | 513 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 24811197 | 24814413 | + | CcPI632755_06g014290.1 | Cco06g1429 | 182029 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g1429 | 513 | SUPERFAMILY | WRKY DNA-binding domain | 370 | 434 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco06g1429 | 513 | ProSiteProfiles | WRKY domain profile. | 202 | 260 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco06g1429 | 513 | FunFam | WRKY transcription factor | 361 | 435 | - | - | |
| Cco06g1429 | 513 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 112 | 457 | IPR044810 | GO:0003700(InterPro) | |
| Cco06g1429 | 513 | MobiDBLite | consensus disorder prediction | 311 | 361 | - | - | |
| Cco06g1429 | 513 | MobiDBLite | consensus disorder prediction | 167 | 182 | - | - | |
| Cco06g1429 | 513 | MobiDBLite | consensus disorder prediction | 183 | 200 | - | - | |
| Cco06g1429 | 513 | Pfam | WRKY DNA -binding domain | 203 | 258 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco06g1429 | 513 | Pfam | WRKY DNA -binding domain | 376 | 432 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco06g1429 | 513 | SMART | WRKY_cls | 374 | 433 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco06g1429 | 513 | SMART | WRKY_cls | 201 | 259 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco06g1429 | 513 | MobiDBLite | consensus disorder prediction | 311 | 342 | - | - | |
| Cco06g1429 | 513 | MobiDBLite | consensus disorder prediction | 115 | 166 | - | - | |
| Cco06g1429 | 513 | MobiDBLite | consensus disorder prediction | 23 | 41 | - | - | |
| Cco06g1429 | 513 | Gene3D | WRKY domain | 359 | 435 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco06g1429 | 513 | Gene3D | WRKY domain | 184 | 261 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco06g1429 | 513 | MobiDBLite | consensus disorder prediction | 53 | 107 | - | - | |
| Cco06g1429 | 513 | MobiDBLite | consensus disorder prediction | 1 | 222 | - | - | |
| Cco06g1429 | 513 | ProSiteProfiles | WRKY domain profile. | 369 | 434 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cco06g1429 | 513 | SUPERFAMILY | WRKY DNA-binding domain | 199 | 260 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g1429 | Cco-Chr6:24811197 | Cco11g0470 | Cco-Chr11:5016895 | 4.90E-39 | dispersed | |
| Cco06g1429 | Cco-Chr6:24811197 | Cco05g2663 | Cco-Chr5:34686077 | 6.20E-42 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 59514 | PF03106 | WRKY | 6.60E-24 | CL0274 | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g1429 | - | - | - | 0.0 |