Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1429 ATGGCGGAGCGGGAAAGCTTCGAAACTGACCAACTCGGAAGCTCCAAGGCGGCTACTGCCGGGCAAGAGGATGATGAAGAAGACATGGAAGATTACGAGGATGAATCAGAGGTGGAATTGGAAGATGGAGGAGGAGGAGGAGGGAGTGAGTTGCAACCGACTGAGTTAAGAACCGGTTCGTGGGTTAGTGAAGCTGTGGTGAGGGGTTCACGTTCTGAAACCCTAACGGTGCCGTCTGCGAATCAATCTTCCGAGAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTGCTGTGCAGTCACTCGAAGGAGCTGAATTGAAGCAAGCTCCATCTTCCCGCAATGAGCCAAAGGCTGTTGAAGCAACCCAGACAGATAAGGTTCAAGAACAAAGCCAGCTTCAGGTGTCAACATTTAAGGGACCTGGTTCGGACCAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCCCAAAGTCCAAGTTTGTCTGAACATAAGCTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCGGAGCCAAGCCAGAAAAATTCCTCCAACCATAAAACTACATCATCTGTTCCGAATGTAAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAAAAGATCGAATGTTGCGATCACTCAGGCCATAGAACAGGGACTGTTTACAAGAGCGAACATAGCCACGATCCACCTAGGAAGATTAGTATCCCCAAGGAAAGTAAGCTCGTGCCATATGTTGAGCCTGTGGTTAAAAAAATCATTGCAGAACATTCCAAAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCCAAAGAACCTGTACGGGAAACAGCTATAGTCCTTGAAAGGAAACGACAGCACTCAAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGGCGATGGACCTGAAACAAAACAAAAAGTTAAGAAAAGCAGTGCGGGAAATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCCAAATTTGTGGTGCATGCAGCAGGTGATGTGGGAATCTCGGGTGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACCGATGTACTTCTGCTGGGTGTCCAGTCCGTAAACATATCGAATCAGCAGTAGAAAATCCAAATGCAGTAATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCAAAGAAACGACACGGTCCACCGAGTGCTCCTCTTGTAGCTGCTGCAGCGCCAGCCTCCATGAGCAATACGCAACCGAAGAAAACCAACGTGGTTGAGAGCCAAATCTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTCTGAGCATTGGATTTGAAATCAAGCCTTGCTGA 1542 46.5 MAERESFETDQLGSSKAATAGQEDDEEDMEDYEDESEVELEDGGGGGGSELQPTELRTGSWVSEAVVRGSRSETLTVPSANQSSENGRSDGLPVNSAVQSLEGAELKQAPSSRNEPKAVEATQTDKVQEQSQLQVSTFKGPGSDQSPTSVTQSISSSQSPSLSEHKLSPKKVQKECKPEPSQKNSSNHKTTSSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDHSGHRTGTVYKSEHSHDPPRKISIPKESKLVPYVEPVVKKIIAEHSKRVINDSDPPTPSKEPVRETAIVLERKRQHSSDSDGNDEFKIKDENGDGPETKQKVKKSSAGNSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNTQPKKTNVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 513
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 24811197 24814413 + CcPI632755_06g014290.1 Cco06g1429 182029
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1429 513 SUPERFAMILY WRKY DNA-binding domain 370 434 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1429 513 ProSiteProfiles WRKY domain profile. 202 260 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1429 513 FunFam WRKY transcription factor 361 435 - -
Cco06g1429 513 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 112 457 IPR044810 GO:0003700(InterPro)
Cco06g1429 513 MobiDBLite consensus disorder prediction 311 361 - -
Cco06g1429 513 MobiDBLite consensus disorder prediction 167 182 - -
Cco06g1429 513 MobiDBLite consensus disorder prediction 183 200 - -
Cco06g1429 513 Pfam WRKY DNA -binding domain 203 258 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1429 513 Pfam WRKY DNA -binding domain 376 432 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1429 513 SMART WRKY_cls 374 433 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1429 513 SMART WRKY_cls 201 259 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1429 513 MobiDBLite consensus disorder prediction 311 342 - -
Cco06g1429 513 MobiDBLite consensus disorder prediction 115 166 - -
Cco06g1429 513 MobiDBLite consensus disorder prediction 23 41 - -
Cco06g1429 513 Gene3D WRKY domain 359 435 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1429 513 Gene3D WRKY domain 184 261 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1429 513 MobiDBLite consensus disorder prediction 53 107 - -
Cco06g1429 513 MobiDBLite consensus disorder prediction 1 222 - -
Cco06g1429 513 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1429 513 SUPERFAMILY WRKY DNA-binding domain 199 260 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1429 Cco-Chr6:24811197 Cco11g0470 Cco-Chr11:5016895 4.90E-39 dispersed
Cco06g1429 Cco-Chr6:24811197 Cco05g2663 Cco-Chr5:34686077 6.20E-42 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59514 PF03106 WRKY 6.60E-24 CL0274 Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1429 - - - 0.0