Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1442 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTCGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCCTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCCCATGCCGCTTCTTCCGCTTCGTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTCCCAGATGAGATTCTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGTGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTCCTCCTAGAGAGGAGAGGTCTAGGGAAACAATTCGAGACAGAGATTTTGGTAGTCATTTTGACTCTAGACAGCAAGATGCAAATCACTTGAATCGTCAAGATTCTAACTCATCTTGGACCCGAACCAGTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAAGCTGAGGTACCATGGTCGGCTAGGAGAGGAAATCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCTGATCTGAACCAGAAGCTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGAGTCCTCTTAAACATTTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGCGAGCGCAGAGATAAAGACAGGCTGGTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTCCTAGGACCAGATAACAAAACCTGTCCAGCTGAAGAAAATGTCGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAATCGCGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCCAACAATTGGATTCCTAGGCGTGAGGAGGTTAAAGCCAAAACAATAAATGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATCAGAAATAGTCGCGTTGTGTCTGGTTCTCCTGGGAACACTAGCCCTGGGGGCTTTCCGATCAATCGACCTGGTTTTGGGGGCATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGATAATTGGGAGGTACCTAGGGCCCGACCTTTTCCAAGGGGCGCAGACGTATCTGGTATCCAGCCTGCTGGACGTGGCCAGGCACCGTTGGTTGGCAAAACATCAACATTGAATGCAAGGCTTCTGCCCCAGGGTACGGGTGGGCTCATTAGCAATAAGACTAGTGCTCTATTGCAGGGTCAGGGTGCAGGTGCAGGTGCAAGTGCAGGTGGTTCTACCGCACGTCCTGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACGGCAGCAACAGTTCTTTCACCTGCCGAGAGACCACAGGTTCCGACTGCATCTTTGAAACAAGATGATCTCAGAAAGAAAACTCTCTCTCTTCTTGAAGAATATTTCAGTATCCGGCTATTGGATGAAGCTCTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTGAAAGAAGCCATTTCCTTGGCTCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACATTGAAACTGGATGTTTGCTATATGCTTCGGTGCTCGACGATGCAGGCATCGATTTGCCAAAAGCACCTGTCAGTTTTGGTGAGATAATCGGGAAACTTGTAACATCCGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACTATTAGTTCTAATGTGTCTGGGCAAGGAATGTTGGACTCGTTGGCATCCGATATCGAGGACTGTCGAAGTCTGGCATATTAA 2421 46.63 MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDEILKIKRDIEVEIFGEEQSWSRGESNQLNQSQNRYSEPDNRDWRGRSAQFSPPREERSRETIRDRDFGSHFDSRQQDANHLNRQDSNSSWTRTSSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATVNIRNSRVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPFPRGADVSGIQPAGRGQAPLVGKTSTLNARLLPQGTGGLISNKTSALLQGQGAGAGASAGGSTARPVNFGHGLEPSGQVHKPITAATVLSPAERPQVPTASLKQDDLRKKTLSLLEEYFSIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDIETGCLLYASVLDDAGIDLPKAPVSFGEIIGKLVTSGGLDFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGMLDSLASDIEDCRSLAY 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24881816 24888156 - CcPI632755_06g014420.1 Cco06g1442 182042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1442 806 MobiDBLite consensus disorder prediction 174 194 - -
Cco06g1442 806 ProSiteProfiles MI domain profile. 640 762 IPR003891 -
Cco06g1442 806 MobiDBLite consensus disorder prediction 113 130 - -
Cco06g1442 806 MobiDBLite consensus disorder prediction 1 43 - -
Cco06g1442 806 FunFam Eukaryotic translation initiation factor isoform 4G-2 210 445 - -
Cco06g1442 806 MobiDBLite consensus disorder prediction 25 43 - -
Cco06g1442 806 SUPERFAMILY ARM repeat 636 795 IPR016024 -
Cco06g1442 806 SMART ma3_7 641 753 IPR003891 -
Cco06g1442 806 SUPERFAMILY ARM repeat 212 446 IPR016024 -
Cco06g1442 806 MobiDBLite consensus disorder prediction 131 173 - -
Cco06g1442 806 SMART if4_15 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco06g1442 806 MobiDBLite consensus disorder prediction 585 610 - -
Cco06g1442 806 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 56 804 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Cco06g1442 806 Pfam MA3 domain 641 753 IPR003891 -
Cco06g1442 806 MobiDBLite consensus disorder prediction 112 198 - -
Cco06g1442 806 Gene3D - 634 800 - -
Cco06g1442 806 Gene3D - 210 445 - -
Cco06g1442 806 MobiDBLite consensus disorder prediction 481 502 - -
Cco06g1442 806 Pfam MIF4G domain 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0341 Cco-Chr3:3764961 Cco06g1442 Cco-Chr6:24881816 3.30E-09 transposed
Cco05g0344 Cco-Chr5:2800598 Cco06g1442 Cco-Chr6:24881816 7.20E-56 transposed
Cco06g0891 Cco-Chr6:11127628 Cco06g1442 Cco-Chr6:24881816 1.20E-55 transposed
Cco05g1851 Cco-Chr5:27451518 Cco06g1442 Cco-Chr6:24881816 7.30E-281 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1442 K03260 - csv:101207520 1390.94