Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1442 | ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTCGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCCTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCCCATGCCGCTTCTTCCGCTTCGTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTCCCAGATGAGATTCTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGTGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTCCTCCTAGAGAGGAGAGGTCTAGGGAAACAATTCGAGACAGAGATTTTGGTAGTCATTTTGACTCTAGACAGCAAGATGCAAATCACTTGAATCGTCAAGATTCTAACTCATCTTGGACCCGAACCAGTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAAGCTGAGGTACCATGGTCGGCTAGGAGAGGAAATCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCTGATCTGAACCAGAAGCTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGAGTCCTCTTAAACATTTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGCGAGCGCAGAGATAAAGACAGGCTGGTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTCCTAGGACCAGATAACAAAACCTGTCCAGCTGAAGAAAATGTCGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAATCGCGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCCAACAATTGGATTCCTAGGCGTGAGGAGGTTAAAGCCAAAACAATAAATGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATCAGAAATAGTCGCGTTGTGTCTGGTTCTCCTGGGAACACTAGCCCTGGGGGCTTTCCGATCAATCGACCTGGTTTTGGGGGCATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGATAATTGGGAGGTACCTAGGGCCCGACCTTTTCCAAGGGGCGCAGACGTATCTGGTATCCAGCCTGCTGGACGTGGCCAGGCACCGTTGGTTGGCAAAACATCAACATTGAATGCAAGGCTTCTGCCCCAGGGTACGGGTGGGCTCATTAGCAATAAGACTAGTGCTCTATTGCAGGGTCAGGGTGCAGGTGCAGGTGCAAGTGCAGGTGGTTCTACCGCACGTCCTGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACGGCAGCAACAGTTCTTTCACCTGCCGAGAGACCACAGGTTCCGACTGCATCTTTGAAACAAGATGATCTCAGAAAGAAAACTCTCTCTCTTCTTGAAGAATATTTCAGTATCCGGCTATTGGATGAAGCTCTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTGAAAGAAGCCATTTCCTTGGCTCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACATTGAAACTGGATGTTTGCTATATGCTTCGGTGCTCGACGATGCAGGCATCGATTTGCCAAAAGCACCTGTCAGTTTTGGTGAGATAATCGGGAAACTTGTAACATCCGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACTATTAGTTCTAATGTGTCTGGGCAAGGAATGTTGGACTCGTTGGCATCCGATATCGAGGACTGTCGAAGTCTGGCATATTAA | 2421 | 46.63 | MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDEILKIKRDIEVEIFGEEQSWSRGESNQLNQSQNRYSEPDNRDWRGRSAQFSPPREERSRETIRDRDFGSHFDSRQQDANHLNRQDSNSSWTRTSSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATVNIRNSRVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPFPRGADVSGIQPAGRGQAPLVGKTSTLNARLLPQGTGGLISNKTSALLQGQGAGAGASAGGSTARPVNFGHGLEPSGQVHKPITAATVLSPAERPQVPTASLKQDDLRKKTLSLLEEYFSIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDIETGCLLYASVLDDAGIDLPKAPVSFGEIIGKLVTSGGLDFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGMLDSLASDIEDCRSLAY | 806 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24881816 | 24888156 | - | CcPI632755_06g014420.1 | Cco06g1442 | 182042 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1442 | 806 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
Cco06g1442 | 806 | ProSiteProfiles | MI domain profile. | 640 | 762 | IPR003891 | - | |
Cco06g1442 | 806 | MobiDBLite | consensus disorder prediction | 113 | 130 | - | - | |
Cco06g1442 | 806 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cco06g1442 | 806 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 210 | 445 | - | - | |
Cco06g1442 | 806 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Cco06g1442 | 806 | SUPERFAMILY | ARM repeat | 636 | 795 | IPR016024 | - | |
Cco06g1442 | 806 | SMART | ma3_7 | 641 | 753 | IPR003891 | - | |
Cco06g1442 | 806 | SUPERFAMILY | ARM repeat | 212 | 446 | IPR016024 | - | |
Cco06g1442 | 806 | MobiDBLite | consensus disorder prediction | 131 | 173 | - | - | |
Cco06g1442 | 806 | SMART | if4_15 | 219 | 444 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cco06g1442 | 806 | MobiDBLite | consensus disorder prediction | 585 | 610 | - | - | |
Cco06g1442 | 806 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 56 | 804 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER) | |
Cco06g1442 | 806 | Pfam | MA3 domain | 641 | 753 | IPR003891 | - | |
Cco06g1442 | 806 | MobiDBLite | consensus disorder prediction | 112 | 198 | - | - | |
Cco06g1442 | 806 | Gene3D | - | 634 | 800 | - | - | |
Cco06g1442 | 806 | Gene3D | - | 210 | 445 | - | - | |
Cco06g1442 | 806 | MobiDBLite | consensus disorder prediction | 481 | 502 | - | - | |
Cco06g1442 | 806 | Pfam | MIF4G domain | 219 | 444 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0341 | Cco-Chr3:3764961 | Cco06g1442 | Cco-Chr6:24881816 | 3.30E-09 | transposed | |
Cco05g0344 | Cco-Chr5:2800598 | Cco06g1442 | Cco-Chr6:24881816 | 7.20E-56 | transposed | |
Cco06g0891 | Cco-Chr6:11127628 | Cco06g1442 | Cco-Chr6:24881816 | 1.20E-55 | transposed | |
Cco05g1851 | Cco-Chr5:27451518 | Cco06g1442 | Cco-Chr6:24881816 | 7.30E-281 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1442 | K03260 | - | csv:101207520 | 1390.94 |