Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1457 | ATGGCGAAATCCACATCGCAACAGGTTCAGATTAGGGAATCGAATGGAAATGTCGTGATGAAAACTAAAACGAAGCGAACTCGGAGGAGCGTTCCGAGAGATTCTCCTCCTCAACGAAGCTCTATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGTAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATATGATGATGAAGAAGCAGCAGCCCATGCTTACGACCTTGCAGCATTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTCAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCGACCTAGGACTCTTCCCATCGGACCAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCGCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGCAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGAGACCTCAGGATCTTACTGCTATGGAGAAGCGGAGGATGCAATTTTTAGCGACTTCAATTCTTTCATTCCGCCGCCGCTATCGCATTACGATTTCGTGGATTAG | 1062 | 48.87 | MAKSTSQQVQIRESNGNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELDLGLFPSDQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGEAEDAIFSDFNSFIPPPLSHYDFVD | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25035595 | 25039955 | + | CcPI632755_06g014570.1 | Cco06g1457 | 182057 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1457 | 353 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 28 | 253 | - | - | |
Cco06g1457 | 353 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cco06g1457 | 353 | FunFam | AP2-like ethylene-responsive transcription factor | 140 | 201 | - | - | |
Cco06g1457 | 353 | ProSiteProfiles | AP2/ERF domain profile. | 141 | 199 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | SMART | rav1_2 | 42 | 111 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | SMART | rav1_2 | 141 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cco06g1457 | 353 | SUPERFAMILY | DNA-binding domain | 41 | 106 | IPR016177 | GO:0003677(InterPro) | |
Cco06g1457 | 353 | PRINTS | Ethylene responsive element binding protein signature | 181 | 201 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | PRINTS | Ethylene responsive element binding protein signature | 43 | 54 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | Pfam | AP2 domain | 140 | 191 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | CDD | AP2 | 140 | 201 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | MobiDBLite | consensus disorder prediction | 240 | 265 | - | - | |
Cco06g1457 | 353 | FunFam | AP2-like ethylene-responsive transcription factor | 41 | 107 | - | - | |
Cco06g1457 | 353 | ProSiteProfiles | AP2/ERF domain profile. | 42 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | Gene3D | AP2/ERF domain | 42 | 107 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | Gene3D | AP2/ERF domain | 140 | 201 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco06g1457 | 353 | SUPERFAMILY | DNA-binding domain | 140 | 201 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2472 | Cco-Chr5:33153523 | Cco06g1457 | Cco-Chr6:25035595 | 3.50E-75 | dispersed | |
Cco06g1457 | Cco-Chr6:25035595 | Cco09g0332 | Cco-Chr9:2933280 | 2.40E-106 | dispersed | |
Cco06g1457 | Cco-Chr6:25035595 | Cco08g1029 | Cco-Chr8:22126054 | 5.10E-80 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59515 | PF00847 | AP2 | 3.40E-09 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1457 | K09285 | - | csv:101219103 | 660.988 |