Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1457 ATGGCGAAATCCACATCGCAACAGGTTCAGATTAGGGAATCGAATGGAAATGTCGTGATGAAAACTAAAACGAAGCGAACTCGGAGGAGCGTTCCGAGAGATTCTCCTCCTCAACGAAGCTCTATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGTAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATATGATGATGAAGAAGCAGCAGCCCATGCTTACGACCTTGCAGCATTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTCAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCGACCTAGGACTCTTCCCATCGGACCAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCGCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGCAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGAGACCTCAGGATCTTACTGCTATGGAGAAGCGGAGGATGCAATTTTTAGCGACTTCAATTCTTTCATTCCGCCGCCGCTATCGCATTACGATTTCGTGGATTAG 1062 48.87 MAKSTSQQVQIRESNGNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELDLGLFPSDQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGEAEDAIFSDFNSFIPPPLSHYDFVD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25035595 25039955 + CcPI632755_06g014570.1 Cco06g1457 182057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1457 353 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 253 - -
Cco06g1457 353 MobiDBLite consensus disorder prediction 1 21 - -
Cco06g1457 353 FunFam AP2-like ethylene-responsive transcription factor 140 201 - -
Cco06g1457 353 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 SMART rav1_2 42 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 SMART rav1_2 141 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 MobiDBLite consensus disorder prediction 1 41 - -
Cco06g1457 353 SUPERFAMILY DNA-binding domain 41 106 IPR016177 GO:0003677(InterPro)
Cco06g1457 353 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 Pfam AP2 domain 140 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 CDD AP2 140 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 MobiDBLite consensus disorder prediction 240 265 - -
Cco06g1457 353 FunFam AP2-like ethylene-responsive transcription factor 41 107 - -
Cco06g1457 353 ProSiteProfiles AP2/ERF domain profile. 42 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 Gene3D AP2/ERF domain 42 107 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1457 353 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2472 Cco-Chr5:33153523 Cco06g1457 Cco-Chr6:25035595 3.50E-75 dispersed
Cco06g1457 Cco-Chr6:25035595 Cco09g0332 Cco-Chr9:2933280 2.40E-106 dispersed
Cco06g1457 Cco-Chr6:25035595 Cco08g1029 Cco-Chr8:22126054 5.10E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59515 PF00847 AP2 3.40E-09 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1457 K09285 - csv:101219103 660.988