Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1484 ATGGGCATGGAATTGAGGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAACATAAGAAAACGGCCATTGGAAGCAGCAACGAAGCAGTGCAACTTGAGAAGTCGTCGTCAAGATACTATATTCCGTCGTCGACGTTCTTGATACCTGACAATGGACTAGGGGGAAGCAAAAGTAGATTTGCTGAAACTTTTAAAACTGAGAAGTCTAAGGTGTTTGCAGAGGACCATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACAGGGTGTTCATTTGCTCATGCTTATTGGCACTCTTTGTTGACCCGCTATATCTTTACTTGCCTTCTTTGAATGGGAGTGGGAAATCCCAATGTGTAAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTTCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTCAGAACAGCTTATGTTGCTCCTAGTTCTCGTGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATCAGATCTGATTTTTTTGTCGATCTAGTTGCCACCCTGCCTCTCCCTCAGATGGTCATCTGGTTCATCATACCTGCAACAAGAAGTCGTCTAACTGATCATAAAAACAATGCTCTTGCGCTTATTGTTCTGCTTCAATATATACCGAGATTGTATTTGATTTTCCCACTAAGTTCAGAAATCATTAAGGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTTTATATGTTGGCTAGCCATGTTCTAGGTGCTACATGGTATTTGCTGTCAGTTGATAGATATACTTCATGCTGGAAATCATTTTGTAGGAAGAAGGAATATAATCCACTAGAATGTGACCTAACTTTTTTTGATTGCGATACATTTAACCATAATGACCGCGATACATGGGCAAATAGTACACTTGTTTTTGAAAAATGTGGCACTCATGGCACTCATGGAGTTTTCAATTATGGCATTTTTGAGAAAGCAATGTCGAAGAATGTCGTCTCTTCAAGCTTTATTGCAAAGTACTTCTACTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATACGGACAAAATTTGGAAACAACGACGTTCATTGGTGAGACATTGTTTGCTGTACTCATTGCCATCTTAGGCCTTGTATTATTCGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTTACCGTGAGGCTCGAAGAATGGAGACTAAAGCGAAGAGATACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTGCAATATAAGTGGGTAGCAACAAGAGGAGTTGATGAAGAAACCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGCGATATTCAGTGCCACCTATGCCTAGATCTCGTCCGACGAGTTCCTTTCTTCGCACAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGGTCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAGGGTGACCCGGTAACAGAGATGCTGTTCATTATTCGAGGCAGATTGGAGAGTTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCCATAACGTTACGTCCTGGCGACTTTTGTGGGGAGGAACTACTTTCTTGGGCTTTGCACCCAAAATCCACGACCAACTTGCCCTCCTCAACTAGAACAGTCAAGGCACTCAATGAAGTTGAAGCTTTTGCACTCTGTGCAGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCACAGTAAAAAATTGCAGCACACATTCCGCTTTTACTCTCATCATTGGAGAACATGGGCAGCCTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTCTTAATCAAAGAATCATTTACTTTATCAGAAAAAGTGGCTGACGAAACTAGCCAAGGAGAGGAACAATTCTCTGTTGTTTCAAATCCTTCTCAGACTAAAACGTATCTGGATATAACCTTGCTAGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGCGCTCAGAGAATGAAAGACGACTTGCCAAAGTTACAAAAGCCCGAGGAACCCGACTTTTCCATTGAGCCAGATAGATAA 2199 42.2 MGMELRKEKLVRFYSDHKKHKKTAIGSSNEAVQLEKSSSRYYIPSSTFLIPDNGLGGSKSRFAETFKTEKSKVFAEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPSLNGSGKSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFVDLVATLPLPQMVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNPLECDLTFFDCDTFNHNDRDTWANSTLVFEKCGTHGTHGVFNYGIFEKAMSKNVVSSSFIAKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEETILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVKALNEVEAFALCAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLIKESFTLSEKVADETSQGEEQFSVVSNPSQTKTYLDITLLASRFAANTRRGAQRMKDDLPKLQKPEEPDFSIEPDR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25346448 25352432 + CcPI632755_06g014840.1 Cco06g1484 182084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1484 732 FunFam Cyclic nucleotide-gated ion channel 1 494 612 - -
Cco06g1484 732 SUPERFAMILY cAMP-binding domain-like 426 618 IPR018490 -
Cco06g1484 732 Gene3D Jelly Rolls 494 614 IPR014710 -
Cco06g1484 732 Pfam Cyclic nucleotide-binding domain 519 607 IPR000595 -
Cco06g1484 732 FunFam Cyclic nucleotide-gated ion channel 1 423 487 - -
Cco06g1484 732 CDD CAP_ED 496 627 IPR000595 -
Cco06g1484 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 713 - -
Cco06g1484 732 Gene3D Helix hairpin bin 424 487 - -
Cco06g1484 732 ProSiteProfiles cAMP/cGMP binding motif profile. 496 580 IPR000595 -
Cco06g1484 732 MobiDBLite consensus disorder prediction 707 732 - -
Cco06g1484 732 Gene3D - 113 421 - -
Cco06g1484 732 Pfam Ion transport protein 96 423 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco06g1484 732 SMART cnmp_10 496 627 IPR000595 -
Cco06g1484 732 SUPERFAMILY Voltage-gated potassium channels 88 418 - -
Cco06g1484 732 PRINTS EAG/ELK/ERG potassium channel family signature 409 418 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco06g1484 732 PRINTS EAG/ELK/ERG potassium channel family signature 459 466 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco06g1484 732 PRINTS EAG/ELK/ERG potassium channel family signature 271 281 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco06g1484 732 PRINTS EAG/ELK/ERG potassium channel family signature 154 163 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco06g1484 732 PRINTS EAG/ELK/ERG potassium channel family signature 391 402 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1858 Cco-Chr1:31102437 Cco06g1484 Cco-Chr6:25346448 2.50E-115 dispersed
Cco04g1103 Cco-Chr4:26448001 Cco06g1484 Cco-Chr6:25346448 1.70E-177 dispersed
Cco05g2909 Cco-Chr5:36631380 Cco06g1484 Cco-Chr6:25346448 1.70E-279 dispersed
Cco06g1484 Cco-Chr6:25346448 Cco06g1893 Cco-Chr6:29123325 9.50E-230 dispersed
Cco06g1484 Cco-Chr6:25346448 Cco10g1423 Cco-Chr10:27327317 3.40E-243 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1484 K27629 - csv:101218643 1407.51