Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1485 ATGTTGATAACACTCAGAGAAGCTGCTGCAGCTTCTTCTTCGCCCATTCCCTTCACCCTCTCCACTCAATCTCTTACCAATTCTAAGCGCTTTCTAAGACCTAGAATTTCACTCACCCGAGCTTCCTTCTCTGTTCCAGGCAAGCCCAGCGCCACCAAATCCTGGAACCTTGCCCTCATTTCCAACAGTTTTGAGAGCTCAGTTTTTGATCCGTTGGGCATCCGTCCAGATCTTTCTTCCGAATTAAGTAGTACGTGGGAAAATTTTCTTGGCTATTTTGGTCAAACATTTGATAGTGCTTCAAGCACAAAAAAAGATAAATCCCCCTCAGCTCGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGATTTCTTCAAAGGTCCCTTGCCTGGAAAATTTCTACAGCTCTTGGGCTATTTAGCTCTTTCAAGGCTTGGAATCTATATACCTCTTGGTGGAGTGAACCGAGAGGCTTTTGTTGGGAACTTGGATCAGAATAGCTTATTGAGCACTTTAGATTCCTTTTCTGGAGGAGGCATTGGTAGGCTGGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCACAAATTGTCTTCCAGCTTCTTGCTCAAATTTATCCAAAATTGCAAGACCTTCAGAAAAGAGAAGGTGAAGCAGGGCGAAAGAAAATTCTGCAATATACTCGATATGCCTCAGTTGGATTTGCAATCGTACAAGCAATTGGCCAAGTTCTCTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAATGGGTGCTCTCTTCTGTTACTTTATTAACACTTGGCTCAGTCATAACAACGTACATTGGGGAACGGATCACAGACCTAAAGCTAGGAAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATTTACCAGCATCCTTTGGAAGGACCGCTGCACAGGCATTCCAGGATGGTAACTATATAGGATTGGTTGCTATCATGATATCCTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCAGAAAGGAAAATCCCCCTCAACTATGCGTCAAGATACACAAGCAGAGGTGGAGGACTTCAGAAATCTGCTTACCTGCCTTTCAAGGTAAATAGTTCTGGTGTGATGCCGATCATTTTCTCAACATCAACATTAGCCCTTCCAGGTACTCTAGCTCGCTTCACGGGGTTATCGGTCCTAAAGAAGGCTGCACTTGCTTTAAATCCAGGAGGTTCGTTCTATCTGCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAATTGGATCCCGATGATGTGAGTGAACAATTGAAGCGGCAGGGTGCTTCGATTCCCCTCGTCCGTCCAGGCAAAAGTACAGCTTCATTTCTGAAAGCGGTTCTAAGTCGGATTTCAGTACTTGGTTCAGCCTTCTTGGCAATCCTTGCTGCTGGTCCTGCGGTGATTGAGCAAACAACACATTTGACGGCATTTCGAGGATTTGCGGGAACCTCTGTTCTTATACTTGTTGGTTGTGCTACAGACACTGCCAGAAAAGTACAAGCTGAGATAATTTCCCAGAAGTACAAGAATATAGAATTCTACGACATTGATAGCCCAAGCTCTTATAACGTTGGATTAAAGCAAGTAATTGATAAACTGTACATCAGGGAGGAATTAGGCAGTAGGCTCCCGTAA 1710 43.8 MLITLREAAAASSSPIPFTLSTQSLTNSKRFLRPRISLTRASFSVPGKPSATKSWNLALISNSFESSVFDPLGIRPDLSSELSSTWENFLGYFGQTFDSASSTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQAFQDGNYIGLVAIMISFFLLVLGIVYVQEAERKIPLNYASRYTSRGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKKAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSPSSYNVGLKQVIDKLYIREELGSRLP 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25352525 25358884 - CcPI632755_06g014850.1 Cco06g1485 182085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1485 569 Hamap Protein translocase subunit SecY [secY]. 125 537 IPR026593 -
Cco06g1485 569 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 128 536 IPR002208 GO:0005048(PANTHER)|GO:0006616(PANTHER)|GO:0008320(PANTHER)|GO:0009535(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)
Cco06g1485 569 ProSitePatterns Protein secY signature 1. 188 207 IPR030659 -
Cco06g1485 569 FunFam Preprotein translocase subunit SECY, chloroplastic 128 533 - -
Cco06g1485 569 ProSitePatterns Protein secY signature 2. 280 297 IPR030659 -
Cco06g1485 569 Pfam SecY 189 520 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Cco06g1485 569 PRINTS Preprotein translocase SecY subunit signature 378 397 - -
Cco06g1485 569 PRINTS Preprotein translocase SecY subunit signature 417 439 - -
Cco06g1485 569 PRINTS Preprotein translocase SecY subunit signature 229 252 - -
Cco06g1485 569 PRINTS Preprotein translocase SecY subunit signature 261 286 - -
Cco06g1485 569 PRINTS Preprotein translocase SecY subunit signature 137 155 - -
Cco06g1485 569 PRINTS Preprotein translocase SecY subunit signature 506 524 - -
Cco06g1485 569 PRINTS Preprotein translocase SecY subunit signature 187 207 - -
Cco06g1485 569 PRINTS Preprotein translocase SecY subunit signature 287 310 - -
Cco06g1485 569 PRINTS Preprotein translocase SecY subunit signature 472 490 - -
Cco06g1485 569 Gene3D SecY subunit domain 128 533 IPR023201 -
Cco06g1485 569 NCBIfam preprotein translocase subunit SecY 136 533 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Cco06g1485 569 SUPERFAMILY Preprotein translocase SecY subunit 129 527 IPR023201 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1485 K10956 - csv:101222431 994.571