Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1495 | ATGGATATCCATGCCGTCTACGCAAAGCCGCCATTGTTGGCTTGCCGACCTCTGCTGAAGAAAAAATTGCATGGCAGATTGACGGCTGAGAGGAGGAAGAGGAAGAAGATGCATTGGTGTATGGATGATGATTTGAGTGAAAAAAGAAAAAGAAAAATTGGTGTTGTTAAAGGCGTAGAGTATAATGGGAAGCAACCCGGCAGCATATCCAACAACAGAGGCCGGCCGAGGTCGGCTTTGAATACAATTACAATTGGCAAAATTGGAAACATGGGTACGTCGGTTTTAAAAGAGGAAAGTCCTTTTTTGTACCAATCAGATGCTGACCTGACGCAAAACCCAAAGCCATGGGATCGTCTTTCAGTTGCTGTGATTCTGAGAAAGTTGGGTGGAGGCAACAGTTCATGGAGGATGTATACGTACAAGGAGTTGCATGCAGCCACCAACGGTTTCCATGACGACAACAAGCTGGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGAAAGACCACCGATGGCCTTCAGATAGCGGTGAAGAAGTTGAAAGCGATGAATTATAAGGCAGAAATGGAGTTTGCGGTGGAAGTGGAAGTGCTGGCGAGGCTGAGGCATAAGAATCTGTTGGGTCTGAGAGGCTATTGTGTGGGGACTGATCAAAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGTTGTCTCATCTTCATGGCCACTTTGCTTCTGAAGCTCTCTTGGATTGGAAAACAAGAATGAAAATTGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAAGCCCCCACATAATCCACAGAGACATAAAAGCAAGCAATGTGCTACTAGACTCAGACTTTGAGCCATTAGTTGCTGATTTCGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGCCACATGACAACTCGCGTCAAAGGGACCTTAGGTTATCTTGCTCCCGAATACGCCATGTGGGGCAAAGTTTCGGAGAGCTGTGACGTTTTCAGCTACGGCATTCTTTTACTCGAGCTGATGACCGGAAGGAAGCCGATTGAAAGACTCCCCGGCGGAGCAAAGAGAACCATTTCAGAATGGGTTAGCATCACAATAAACAAAGACAGATTCAAAGACTTAGCTGATAGGAAGCTAAAGGGACAACTCAATTGGAAAGAGTTCGAACAAGTAATGCATTTGGCAATTATGTGTGTGCAAACCGAGGCAGAGAAACGGCCTACTATAAAACAAGTAGTGGATTGTTTGAAAGGTTTGATGGCTGATGCTGGAAATTACAACAAAGTGCCCCTATTAATGACTATTCCAAGTGTTAGATCATATGATAATAATACTAATGAAGATCGTCGAAATCAGCCGGCTAGCAAAGAATTTCATGGTGGAGGAGGAGATGATCAAGAGAGTTTTGATTATGGGGTTTTTAGTGCCATTGAAGAGCAGAGGATCGTAAGAGAATATCCTTATAATAATAATAAACAACCTCCAAATTTTTGGTGA | 1515 | 43.63 | MDIHAVYAKPPLLACRPLLKKKLHGRLTAERRKRKKMHWCMDDDLSEKRKRKIGVVKGVEYNGKQPGSISNNRGRPRSALNTITIGKIGNMGTSVLKEESPFLYQSDADLTQNPKPWDRLSVAVILRKLGGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGHFASEALLDWKTRMKIALGSAEGILYLHQEVSPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVSITINKDRFKDLADRKLKGQLNWKEFEQVMHLAIMCVQTEAEKRPTIKQVVDCLKGLMADAGNYNKVPLLMTIPSVRSYDNNTNEDRRNQPASKEFHGGGGDDQESFDYGVFSAIEEQRIVREYPYNNNKQPPNFW | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25469148 | 25474664 | + | CcPI632755_06g014950.1 | Cco06g1495 | 182095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1495 | 504 | MobiDBLite | consensus disorder prediction | 449 | 470 | - | - | |
Cco06g1495 | 504 | Gene3D | Phosphorylase Kinase; domain 1 | 127 | 226 | - | - | |
Cco06g1495 | 504 | Pfam | Protein kinase domain | 151 | 419 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1495 | 504 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 273 | 285 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g1495 | 504 | PANTHER | OS01G0750732 PROTEIN | 128 | 434 | IPR050885 | - | |
Cco06g1495 | 504 | ProSitePatterns | Protein kinases ATP-binding region signature. | 157 | 180 | IPR017441 | GO:0005524(InterPro) | |
Cco06g1495 | 504 | FunFam | PTI1-like tyrosine-protein kinase At3g15890 | 227 | 435 | - | - | |
Cco06g1495 | 504 | MobiDBLite | consensus disorder prediction | 447 | 471 | - | - | |
Cco06g1495 | 504 | SMART | serkin_6 | 151 | 422 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1495 | 504 | FunFam | PTI1-like tyrosine-protein kinase At3g15890 | 126 | 226 | - | - | |
Cco06g1495 | 504 | Gene3D | Transferase(Phosphotransferase) domain 1 | 227 | 433 | - | - | |
Cco06g1495 | 504 | ProSiteProfiles | Protein kinase domain profile. | 151 | 426 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1495 | 504 | CDD | STKc_IRAK | 157 | 425 | - | - | |
Cco06g1495 | 504 | SUPERFAMILY | Protein kinase-like (PK-like) | 133 | 442 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1495 | Cco-Chr6:25469148 | Cco11g0541 | Cco-Chr11:5714802 | 1.20E-77 | dispersed | |
Cco06g1495 | Cco-Chr6:25469148 | Cco07g1324 | Cco-Chr7:27316064 | 7.80E-114 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86934 | PF00069 | Pkinase | 1.80E-44 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1495 | - | - | - | 0.0 |