Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1495 ATGGATATCCATGCCGTCTACGCAAAGCCGCCATTGTTGGCTTGCCGACCTCTGCTGAAGAAAAAATTGCATGGCAGATTGACGGCTGAGAGGAGGAAGAGGAAGAAGATGCATTGGTGTATGGATGATGATTTGAGTGAAAAAAGAAAAAGAAAAATTGGTGTTGTTAAAGGCGTAGAGTATAATGGGAAGCAACCCGGCAGCATATCCAACAACAGAGGCCGGCCGAGGTCGGCTTTGAATACAATTACAATTGGCAAAATTGGAAACATGGGTACGTCGGTTTTAAAAGAGGAAAGTCCTTTTTTGTACCAATCAGATGCTGACCTGACGCAAAACCCAAAGCCATGGGATCGTCTTTCAGTTGCTGTGATTCTGAGAAAGTTGGGTGGAGGCAACAGTTCATGGAGGATGTATACGTACAAGGAGTTGCATGCAGCCACCAACGGTTTCCATGACGACAACAAGCTGGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGAAAGACCACCGATGGCCTTCAGATAGCGGTGAAGAAGTTGAAAGCGATGAATTATAAGGCAGAAATGGAGTTTGCGGTGGAAGTGGAAGTGCTGGCGAGGCTGAGGCATAAGAATCTGTTGGGTCTGAGAGGCTATTGTGTGGGGACTGATCAAAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGTTGTCTCATCTTCATGGCCACTTTGCTTCTGAAGCTCTCTTGGATTGGAAAACAAGAATGAAAATTGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAAGCCCCCACATAATCCACAGAGACATAAAAGCAAGCAATGTGCTACTAGACTCAGACTTTGAGCCATTAGTTGCTGATTTCGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGCCACATGACAACTCGCGTCAAAGGGACCTTAGGTTATCTTGCTCCCGAATACGCCATGTGGGGCAAAGTTTCGGAGAGCTGTGACGTTTTCAGCTACGGCATTCTTTTACTCGAGCTGATGACCGGAAGGAAGCCGATTGAAAGACTCCCCGGCGGAGCAAAGAGAACCATTTCAGAATGGGTTAGCATCACAATAAACAAAGACAGATTCAAAGACTTAGCTGATAGGAAGCTAAAGGGACAACTCAATTGGAAAGAGTTCGAACAAGTAATGCATTTGGCAATTATGTGTGTGCAAACCGAGGCAGAGAAACGGCCTACTATAAAACAAGTAGTGGATTGTTTGAAAGGTTTGATGGCTGATGCTGGAAATTACAACAAAGTGCCCCTATTAATGACTATTCCAAGTGTTAGATCATATGATAATAATACTAATGAAGATCGTCGAAATCAGCCGGCTAGCAAAGAATTTCATGGTGGAGGAGGAGATGATCAAGAGAGTTTTGATTATGGGGTTTTTAGTGCCATTGAAGAGCAGAGGATCGTAAGAGAATATCCTTATAATAATAATAAACAACCTCCAAATTTTTGGTGA 1515 43.63 MDIHAVYAKPPLLACRPLLKKKLHGRLTAERRKRKKMHWCMDDDLSEKRKRKIGVVKGVEYNGKQPGSISNNRGRPRSALNTITIGKIGNMGTSVLKEESPFLYQSDADLTQNPKPWDRLSVAVILRKLGGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGHFASEALLDWKTRMKIALGSAEGILYLHQEVSPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVSITINKDRFKDLADRKLKGQLNWKEFEQVMHLAIMCVQTEAEKRPTIKQVVDCLKGLMADAGNYNKVPLLMTIPSVRSYDNNTNEDRRNQPASKEFHGGGGDDQESFDYGVFSAIEEQRIVREYPYNNNKQPPNFW 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25469148 25474664 + CcPI632755_06g014950.1 Cco06g1495 182095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1495 504 MobiDBLite consensus disorder prediction 449 470 - -
Cco06g1495 504 Gene3D Phosphorylase Kinase; domain 1 127 226 - -
Cco06g1495 504 Pfam Protein kinase domain 151 419 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1495 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1495 504 PANTHER OS01G0750732 PROTEIN 128 434 IPR050885 -
Cco06g1495 504 ProSitePatterns Protein kinases ATP-binding region signature. 157 180 IPR017441 GO:0005524(InterPro)
Cco06g1495 504 FunFam PTI1-like tyrosine-protein kinase At3g15890 227 435 - -
Cco06g1495 504 MobiDBLite consensus disorder prediction 447 471 - -
Cco06g1495 504 SMART serkin_6 151 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1495 504 FunFam PTI1-like tyrosine-protein kinase At3g15890 126 226 - -
Cco06g1495 504 Gene3D Transferase(Phosphotransferase) domain 1 227 433 - -
Cco06g1495 504 ProSiteProfiles Protein kinase domain profile. 151 426 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1495 504 CDD STKc_IRAK 157 425 - -
Cco06g1495 504 SUPERFAMILY Protein kinase-like (PK-like) 133 442 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1495 Cco-Chr6:25469148 Cco11g0541 Cco-Chr11:5714802 1.20E-77 dispersed
Cco06g1495 Cco-Chr6:25469148 Cco07g1324 Cco-Chr7:27316064 7.80E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86934 PF00069 Pkinase 1.80E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1495 - - - 0.0