Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1497 | ATGGGAATTGACGCTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCTCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCACCGTCTATTGTCGTCCGGACTCTGCTTTCCTCTGCCTTCCCTGCGACTCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAGCAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCGGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTTAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTTTTCAATGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCTCTACGCCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACGTCAATCGCTGAGCCACAGTGTTTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCAGGATCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATATGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTGTGTTCCTGACGGACGTCCAATACGGCGTCGTACCAACGTTTTGA | 1128 | 50.89 | MGIDADSVVKGFGGGWGVVSKPCDSCKTAPATVYCRPDSAFLCLPCDSKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNPVNNHSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQRQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSVFLTDVQYGVVPTF | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25489231 | 25490454 | - | CcPI632755_06g014970.1 | Cco06g1497 | 182097 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1497 | 375 | SMART | bboxneu5 | 66 | 108 | IPR000315 | GO:0008270(InterPro) | |
Cco06g1497 | 375 | SMART | bboxneu5 | 18 | 65 | IPR000315 | GO:0008270(InterPro) | |
Cco06g1497 | 375 | CDD | Bbox1_BBX-like | 66 | 108 | IPR049808 | - | |
Cco06g1497 | 375 | CDD | Bbox1_BBX-like | 22 | 65 | IPR049808 | - | |
Cco06g1497 | 375 | Pfam | CCT motif | 302 | 344 | IPR010402 | GO:0005515(InterPro) | |
Cco06g1497 | 375 | ProSiteProfiles | Zinc finger B-box type profile. | 23 | 65 | IPR000315 | GO:0008270(InterPro) | |
Cco06g1497 | 375 | ProSiteProfiles | CCT domain profile. | 302 | 344 | IPR010402 | GO:0005515(InterPro) | |
Cco06g1497 | 375 | Pfam | B-box zinc finger | 62 | 108 | IPR000315 | GO:0008270(InterPro) | |
Cco06g1497 | 375 | ProSiteProfiles | Zinc finger B-box type profile. | 61 | 108 | IPR000315 | GO:0008270(InterPro) | |
Cco06g1497 | 375 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 14 | 360 | IPR045281 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1497 | Cco-Chr6:25489231 | Cco08g0673 | Cco-Chr8:17923590 | 5.90E-10 | dispersed | |
Cco02g0903 | Cco-Chr2:10896773 | Cco06g1497 | Cco-Chr6:25489231 | 3.20E-06 | transposed | |
Cco07g1610 | Cco-Chr7:30140126 | Cco06g1497 | Cco-Chr6:25489231 | 4.00E-06 | transposed | |
Cco07g1699 | Cco-Chr7:31002298 | Cco06g1497 | Cco-Chr6:25489231 | 2.00E-28 | transposed | |
Cco08g1564 | Cco-Chr8:27253434 | Cco06g1497 | Cco-Chr6:25489231 | 5.60E-68 | transposed | |
Cco11g1273 | Cco-Chr11:25229191 | Cco06g1497 | Cco-Chr6:25489231 | 8.00E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59517 | PF00643 | zf-B_box | 6.80E-07 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1497 | - | - | - | 0.0 |