Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1497 ATGGGAATTGACGCTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCTCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCACCGTCTATTGTCGTCCGGACTCTGCTTTCCTCTGCCTTCCCTGCGACTCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAGCAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCGGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTTAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTTTTCAATGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCTCTACGCCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACGTCAATCGCTGAGCCACAGTGTTTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCAGGATCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATATGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTGTGTTCCTGACGGACGTCCAATACGGCGTCGTACCAACGTTTTGA 1128 50.89 MGIDADSVVKGFGGGWGVVSKPCDSCKTAPATVYCRPDSAFLCLPCDSKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNPVNNHSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQRQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSVFLTDVQYGVVPTF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25489231 25490454 - CcPI632755_06g014970.1 Cco06g1497 182097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1497 375 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
Cco06g1497 375 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
Cco06g1497 375 CDD Bbox1_BBX-like 66 108 IPR049808 -
Cco06g1497 375 CDD Bbox1_BBX-like 22 65 IPR049808 -
Cco06g1497 375 Pfam CCT motif 302 344 IPR010402 GO:0005515(InterPro)
Cco06g1497 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Cco06g1497 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515(InterPro)
Cco06g1497 375 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
Cco06g1497 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Cco06g1497 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 360 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1497 Cco-Chr6:25489231 Cco08g0673 Cco-Chr8:17923590 5.90E-10 dispersed
Cco02g0903 Cco-Chr2:10896773 Cco06g1497 Cco-Chr6:25489231 3.20E-06 transposed
Cco07g1610 Cco-Chr7:30140126 Cco06g1497 Cco-Chr6:25489231 4.00E-06 transposed
Cco07g1699 Cco-Chr7:31002298 Cco06g1497 Cco-Chr6:25489231 2.00E-28 transposed
Cco08g1564 Cco-Chr8:27253434 Cco06g1497 Cco-Chr6:25489231 5.60E-68 transposed
Cco11g1273 Cco-Chr11:25229191 Cco06g1497 Cco-Chr6:25489231 8.00E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59517 PF00643 zf-B_box 6.80E-07 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1497 - - - 0.0