Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1513 ATGCAGCAGAGGCAAACGAGATATATGGAGAGGACGAACTCCATGAGGGAAAAAAGGGGCTTGGAGGGTGGAGAAGATGAGCTGCCAGAGAGAAAACGACCAGCTCTAGCTAGTGTGATAGTAGAAGCTCTGAAGGTGGATAGTTTACAAAAGCTGTGCTCGTCATTGGAACCAATACTCCGTAGAGTGGTTAGTGAGGAAGTGGAACGTGCTTTGGCTAAGATAGGTCCTGCTAGAATTTCTGGAAGGTCTTCTCCTAAAAGGATTGAAGGTCCCGATGGAAGAAACTTGCAACTGCACTTTAGGTCTAGACTGTCTCTTCCCCTGTTCACTGGAGGGAAAGTAGAAGGTGAACAGGGTGCAGCAATCCACGTTGTTCTGGTTGATGCCAACACAGGCCATGTAGTAACATCTGGACAGGAAGCCTTGTCTAAATTGGACATTGTGGTACTTGAAGGTGATTTTAACAATGAAGATGATGAGGATTGGACGGAGGAAGAATTTGAAAGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGGCCTCTATTGACTGGTGACCTGCAGGTTACCCTCAAGGAAGGCGTTGGAACACTAGGGGATTTGACCTTCACTGATAATTCAAGTTGGATTAGGAGCAGAAAGTTCAGACTTGGGTTAAAGGTGGCTTCTGGGTTTTGTGAAGGTGTACGTATTCGTGAAGCAAAAACTGAAGCTTTTACAGTTAAAGATCACCGAGGAGAATTGTATAAAAAGCATTACCCACCTGCATTAAATGATGAGGTATGGAGATTGGAGAAGATTGGAAAGGATGGTTCATTTCACAAGCGGCTTAACAAAAATGGAATATTCTCTGTTGAAGACTTTCTCCGAATGGTCGTTCGTGATTCTCAAAAGTTGCGGAGTATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTCCTAGAACATGCTAAGACCTGTGTCCTGAGCGGGAAGCTGTATATTTATTATCCAGAGGAAACAAGAAATGTTGGTGTTGTTTTTAACAATATCTATGAGCTCAATGGACTGATTACAGGGGAACAATACTTTTCTGCTGATTCTCTGTCTGATAGCCAGAAGGTTTATGTAGATACACTAGTGAATAAAGCATATGAAAATTGGAATCAAGTTGTAGAGTACGATGGCAAGTCACTTTTGAGCTCTAAGCAGCCTAAGAAGTCCAATGCATCCCGAAACGACTTTCAAGGTGGTCATCTTGATATTTCTAATACTCTAGATCACGGACCACTGCCCCGCATGCCAGTGTCAGTTCAGCATCAGCAGCCTGTAGTGGATTCAGGACTCTCAGTTGCAGGGTATAATGATAATACAGCCACAAGATATTCAACCCAGCCTCAGTTTGTGAATTCAACTTCTCGACCACAGTTTGACAACTCTCCATTTACTTCTAATGACTTGATCGGCAATTCTAACCAAGTTCATATCACAAGAAATGACAATAGTGCTTTTGGTTTGGCTCTTGGTCCTCCACAAGCATCATCTTCAGGGTTTCAGGTGCTCGGTTCCTCTATTCAGGAATCTAATCTGAATCCGTTTGACTGGTCAAACAATAGGGACAAGGGAGTTGACGACTTCTTTTCGGAGGATGAGATTCGTATGAGAAGTCATGAAATGCTTGAAAATGAAGATATGCAACAATTGTTGCGAATGTTTAGCATGGGAGGGCATGCATCTGTTAACGTCCATGATGAGGGCTTTTCATTCCCATCATTCATGCCTTCACCAATGCCAAATTTTGATGATCGTAACCGTTCTGGTAAAGCTGTGGTGGGTTGGCTGAAGATCAAAGCTGCAATGAGGTGGGGCTTCTTCATCAGAAAGAAAGCAGCTGAGAGACGTGCGCAGATTGTCGAGTTGGACGAGGAGTAG 1917 43.56 MQQRQTRYMERTNSMREKRGLEGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARISGRSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGQEALSKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKNGIFSVEDFLRMVVRDSQKLRSILGSGMSNKMWEALLEHAKTCVLSGKLYIYYPEETRNVGVVFNNIYELNGLITGEQYFSADSLSDSQKVYVDTLVNKAYENWNQVVEYDGKSLLSSKQPKKSNASRNDFQGGHLDISNTLDHGPLPRMPVSVQHQQPVVDSGLSVAGYNDNTATRYSTQPQFVNSTSRPQFDNSPFTSNDLIGNSNQVHITRNDNSAFGLALGPPQASSSGFQVLGSSIQESNLNPFDWSNNRDKGVDDFFSEDEIRMRSHEMLENEDMQQLLRMFSMGGHASVNVHDEGFSFPSFMPSPMPNFDDRNRSGKAVVGWLKIKAAMRWGFFIRKKAAERRAQIVELDEE 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25640849 25646919 + CcPI632755_06g015130.1 Cco06g1513 182113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1513 638 Pfam Calmodulin binding protein central domain 256 322 IPR046830 -
Cco06g1513 638 Pfam Calmodulin binding protein-like N-terminal domain 97 244 IPR046831 -
Cco06g1513 638 PANTHER OS02G0177800 PROTEIN 16 629 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Cco06g1513 638 MobiDBLite consensus disorder prediction 394 421 - -
Cco06g1513 638 Pfam Calmodulin binding protein C-terminal domain 327 389 IPR046829 -
Cco06g1513 638 MobiDBLite consensus disorder prediction 1 29 - -
Cco06g1513 638 MobiDBLite consensus disorder prediction 394 415 - -
Cco06g1513 638 MobiDBLite consensus disorder prediction 10 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1686 Cco-Chr1:29580226 Cco06g1513 Cco-Chr6:25640849 7.00E-87 dispersed
Cco01g1688 Cco-Chr1:29611983 Cco06g1513 Cco-Chr6:25640849 8.30E-88 dispersed
Cco03g1825 Cco-Chr3:32905583 Cco06g1513 Cco-Chr6:25640849 4.90E-42 dispersed
Cco06g1513 Cco-Chr6:25640849 Cco06g1878 Cco-Chr6:28994145 3.60E-92 dispersed
Cco06g1513 Cco-Chr6:25640849 Cco02g1639 Cco-Chr2:28988606 1.30E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1513 - - - 0.0