Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1519 ATGGCAACCCTCCAAATTCATGGCACCGAAACCGAAATCTATGTGGAGTTTCTGGTAGATCGAATCATCGACCTTCACAAAAGCATCTCGGAGCTTGAAACCCTAAAGCCATGCAAGAAAGTGAACAACCTCTTCACCAACCTAGTGACCTTGTGCATTTTGCCTTGTTCAATGGATGTCTCAACATTGCCACCAAATGTACAAGCCATTCGTGAGAGCCTCATAGTTCTATGTGGCCAAGCTGAAAGCTTACTCGAGTTAGAATTCTCAACTTTGCTAAGCAAAATCCCCAAACCTCTCAACAATCTCATTCTATTTCCATATTACCACAACTACATCAAATTAGCCAACCTTGAAAACAAGATTTTGAAAGACAATGGAGTTGTCAATCCAAAGAAGGTAGCTTTTGTTGGGTCAGGTCCTTTGCCTCTAACTTCAATTATTATGGCCATGAAACACATGAAGGGCACGCATTTCGATAACTATGATGTAGACAGCGTGGCTAATGACGTGGCAGGAAAGATCGTGGGATCGGACGCTGAGCTGGAGGGAAGAATGAAGTTTTGGACGAGGGATATTGTTGAGGTAAAAGAAGAGCTTGGAGGATATGATTGTGTGTTTTTGGCGGCTCTTGTGGGGATGAAGAAGGAAGATAAAGTGAAGATTATAAAGCATTTAAGAAAGTATATGAAAGAAGGTGGGATTGTGGTAGTGAGAAGTGCTAAAGGAGGTAGAGCATTTTTGTACCCTGTGGTTGAAGTTGGAGATTTGGTTGGCTTTGAGATTCTCTCTATTTTTCATCCCACTGATGATGTTGTTAATTCGGTTATCTTAGTTCGCAAGCCTGTGATTATATGA 858 41.61 MATLQIHGTETEIYVEFLVDRIIDLHKSISELETLKPCKKVNNLFTNLVTLCILPCSMDVSTLPPNVQAIRESLIVLCGQAESLLELEFSTLLSKIPKPLNNLILFPYYHNYIKLANLENKILKDNGVVNPKKVAFVGSGPLPLTSIIMAMKHMKGTHFDNYDVDSVANDVAGKIVGSDAELEGRMKFWTRDIVEVKEELGGYDCVFLAALVGMKKEDKVKIIKHLRKYMKEGGIVVVRSAKGGRAFLYPVVEVGDLVGFEILSIFHPTDDVVNSVILVRKPVII 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25688122 25688979 - CcPI632755_06g015190.1 Cco06g1519 182119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1519 285 Gene3D Vaccinia Virus protein VP39 14 282 IPR029063 -
Cco06g1519 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco06g1519 285 PANTHER NICOTIANAMINE SYNTHASE 3 12 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco06g1519 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco06g1519 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 277 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1834 Cco-Chr3:33027459 Cco06g1519 Cco-Chr6:25688122 3.10E-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1519 K05953 - csv:101209464 493.812