Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1522 ATGGCGGCCGACGACGATTCCTCACTGGAGTTCATATTCCGGTCAAAACTCCCCGACATCCTCATCCCCACCCACCTCCCCTTGCACTCATATTGCTTCGAAAAAATCTCCGAATTCAAATACCGTCCATGTCTAATCAACGCCGCCACGGGCAACACCTATACCTACGACGAAGTCCACATAACATCCCGCCGAGTGGCCGCCGGTCTTCACAAGTTAGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACACCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTACCTGGGCGCCGCCACCACGCCGGCGAACCCATTCTTCACTCCGGCGGAAATTGCAAAACAAGCGACGTCATCCGGCGCCAAACTTATCATAACCCAAGCCGCGTTTGCAGAAAAAGTGAAAAAACTATCTCAAGAAAACAAGGCGATCATCAAAGTAATCTTCATCGACGACGACCCTCCGCCGGACGGAGGATATCATTTTTCGTCGTTGACTGATGACGTGGCAAAAGAGGAGGAAAGGGAAATGGGAGATGTGAAAATCAGCCCAGACGACGTCGTTGCGTTGCCTTACTCGTCTGGGACCACCGGTCTTCCAAAAGGAGTTATGCTGACTCATAAAGCTCTAGTGACCAGCGTGGCACAACAGGTGGACGGTGAGAACCCACACCTATACATCCGAAGCGACGACGTCGTTCTGTGCGTGCTTCCTTTGTTTCACATATATTCCCTAAACTCAATCATGATGTGTTCGTTACGAGTAGGAGCTGCGATTTTAATCGTACAAAAATTCGACGTTAATTCGCTTCTGGAATTGATTCCTAAATATAGAGTCACCATTGCACCCATTGTTCCTCCTATTGTACTTGCAATTGCCAAGAGTCCGGCTCTGGACCATTACGACATGTCGTCCATACGTATTGTGATGTCGGGAGCCGCGCCCTTGGGGAAAACTCTTGAAGATGCCTTTAGAGCCAAGCTTCCTCATGTCATTCTCGGCCAGGGATACGGAATGACGGAGTCGGGGTCCGCGATGACAATGTCGTTGGCGTTTGCAAAGGAGAGGTTCGAGATGAAATCGGGAGGTTGTGGGACGTTAATGAGAAATTCAGAGATGAAGATTGTAAACCCTCAAACGGGAGCGTCTCTTCCAAGGAATCAAGCTGGGGAGATTTGTATTAGAAGTCCTCAGATTATGAAAGGATACCTCAACGAGGAAGAGGCCACGAAGGGCATAATTGATAAAGATGGATGGCTGCACACCGGCGATATAGGTTTCGTCGATGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAGCTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTTATATCCCACGGTCGCATCGCTGATGTCGCGGTTATACCTATGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGTTCCAAAATCACAGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTCTATAAGAGGATTAATCGTGTCTTCTTCGTGGATTCTATTCCTAAAAGTCAATCTGGCAAAATCTTACGGAGACAACTTAGAGCTTTACTCGCAGCTAGTATTCCTAATTAA 1656 49.03 MAADDDSSLEFIFRSKLPDILIPTHLPLHSYCFEKISEFKYRPCLINAATGNTYTYDEVHITSRRVAAGLHKLGIGKGDVIMLLLQNTPQFVLAFLGASYLGAATTPANPFFTPAEIAKQATSSGAKLIITQAAFAEKVKKLSQENKAIIKVIFIDDDPPPDGGYHFSSLTDDVAKEEEREMGDVKISPDDVVALPYSSGTTGLPKGVMLTHKALVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDVNSLLELIPKYRVTIAPIVPPIVLAIAKSPALDHYDMSSIRIVMSGAAPLGKTLEDAFRAKLPHVILGQGYGMTESGSAMTMSLAFAKERFEMKSGGCGTLMRNSEMKIVNPQTGASLPRNQAGEICIRSPQIMKGYLNEEEATKGIIDKDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHGRIADVAVIPMKDEVAGEVPVAFIVRSDGSKITEDEIKQYISKQVVFYKRINRVFFVDSIPKSQSGKILRRQLRALLAASIPN 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25715960 25720046 - CcPI632755_06g015220.1 Cco06g1522 182122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1522 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 446 - -
Cco06g1522 551 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Cco06g1522 551 SUPERFAMILY Acetyl-CoA synthetase-like 9 547 - -
Cco06g1522 551 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Cco06g1522 551 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Cco06g1522 551 Gene3D - 446 548 IPR045851 -
Cco06g1522 551 Pfam AMP-binding enzyme 37 409 IPR000873 -
Cco06g1522 551 CDD 4CL 22 541 - -
Cco06g1522 551 Gene3D - 3 445 IPR042099 -
Cco06g1522 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 542 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0193 Cco-Chr1:1852096 Cco06g1522 Cco-Chr6:25715960 4.90E-23 dispersed
Cco06g1522 Cco-Chr6:25715960 Cco09g0342 Cco-Chr9:3026193 2.10E-205 dispersed
Cco01g0291 Cco-Chr1:2840711 Cco06g1522 Cco-Chr6:25715960 1.40E-49 transposed
Cco01g0833 Cco-Chr1:8789343 Cco06g1522 Cco-Chr6:25715960 7.80E-22 transposed
Cco05g1426 Cco-Chr5:15968608 Cco06g1522 Cco-Chr6:25715960 1.30E-22 transposed
Cco10g1266 Cco-Chr10:25399980 Cco06g1522 Cco-Chr6:25715960 1.40E-209 transposed
Cco10g1467 Cco-Chr10:27779771 Cco06g1522 Cco-Chr6:25715960 3.30E-19 transposed
Cco11g1304 Cco-Chr11:25655547 Cco06g1522 Cco-Chr6:25715960 5.60E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1522 K01904 - csv:101218077 869.381