Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1537 ATGAATTCTTCTTCTTCAGCTTCTCCAGATTGGCTTGCTTTCTCTCTCTCCAATAATCCCAACTCTCTTTCTCTCTTCCATCATCATCCTAATTCTACTGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGGGGACTTTCTCCGGGGAGCTTCCACTCCTCCGCCGCCGCCTTCGCCTTCTCCCTTTCACTTTTCTCCCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTCCATGGACCACCAACCACCCATTTCCCTGAGCAACACTTTCACCATCTTCACGCGCCACCGCCACCACCACCGCCACCGCCTCCTACTCAATCCGATACTTCACCGCCCCCACCTCCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCTATTTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAATAGTTGCAGGAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCCAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCATCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTATCTTGGAACATTCAGCACTCAGGAAGAAGCAGCTGAAGCCTATGATATAGCAGCCATAAAATTCAGAGGCCTCAATGCCGTTACAAACTTTGACATCAGTCGTTACGATGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGAGCATCAAATCCAAAACCACCTCCGACTCCGCTGCCTCGGATGGAGGCAGCCGATCGGCCGAAGAACGTGACGTCCATCATTCTCCTCCGTCGTCAACCGCAACTTTCATCTCGTCGCAGCCGAACAACAACTCCTCCTCGAGCAATCTTAGCTTTGCAATGCCCATCAAACAAGACCCATCGGATCAATACTGGTCTATCCTCGGCTACAATAACCCCAGCGCCTACAACACAAACCTCCCAAAACCCGACGATGTTCCACCATTGTCGTCAATGTTTCAACAACCTGGATCCACAATGTTTTCTGCCATCACCGACTTGGCATCGAGCGGATCACCGCTGACCGAAGGCGGGATGTACCTACAGCAGCAGCAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAGCCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA 1452 49.1 MNSSSSASPDWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLGDFLRGASTPPPPPSPSPFHFSPHQSEICDSDLKTIAASFLHGPPTTHFPEQHFHHLHAPPPPPPPPPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSSIKSKTTSDSAASDGGSRSAEERDVHHSPPSSTATFISSQPNNNSSSSNLSFAMPIKQDPSDQYWSILGYNNPSAYNTNLPKPDDVPPLSSMFQQPGSTMFSAITDLASSGSPLTEGGMYLQQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGME 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25868736 25872546 + CcPI632755_06g015370.1 Cco06g1537 182137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1537 483 Gene3D AP2/ERF domain 240 300 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 Gene3D AP2/ERF domain 138 206 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 CDD AP2 239 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 PRINTS Ethylene responsive element binding protein signature 280 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 ProSiteProfiles AP2/ERF domain profile. 240 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 SMART rav1_2 240 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 SMART rav1_2 138 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 Pfam AP2 domain 241 290 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 Pfam AP2 domain 139 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 MobiDBLite consensus disorder prediction 315 333 - -
Cco06g1537 483 SUPERFAMILY Formin homology 2 domain (FH2 domain) 106 193 - -
Cco06g1537 483 ProSiteProfiles AP2/ERF domain profile. 138 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 SUPERFAMILY DNA-binding domain 137 206 IPR016177 GO:0003677(InterPro)
Cco06g1537 483 CDD AP2 137 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1537 483 MobiDBLite consensus disorder prediction 85 131 - -
Cco06g1537 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 93 362 - -
Cco06g1537 483 FunFam AP2-like ethylene-responsive transcription factor 239 300 - -
Cco06g1537 483 FunFam AP2-like ethylene-responsive transcription factor ANT 137 206 - -
Cco06g1537 483 MobiDBLite consensus disorder prediction 347 371 - -
Cco06g1537 483 SUPERFAMILY DNA-binding domain 239 300 IPR016177 GO:0003677(InterPro)
Cco06g1537 483 MobiDBLite consensus disorder prediction 315 371 - -
Cco06g1537 483 MobiDBLite consensus disorder prediction 46 71 - -
Cco06g1537 483 MobiDBLite consensus disorder prediction 101 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1537 Cco-Chr6:25868736 Cco11g0916 Cco-Chr11:13224340 1.50E-101 dispersed
Cco06g1537 Cco-Chr6:25868736 Cco04g1540 Cco-Chr4:30761904 7.70E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59522 PF00847 AP2 3.50E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1537 K09285 - csv:101210453 700.279