Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1544 ATGGCGGGAAAACTGAGTCTGGAGGAGATCAAGAACGAAACTGTTGATCTGGAGAAAATACCAGTTGCAGAAGTGTTTGAACAATTGAAATGTGGCCCAGAAGGTCTCACAACTCAAGAAGGAGAAGACAGACTTCAATTATTTGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAAATATTAAAGTTTTTGGGGTTCATGTGGAATCCCTTATCATGGGTTATGGAAGCTGCAGCTATTATGGCAATTGCTTTGGCTAATGGTGGTGGAAAGCCTCCAGATTGGGAAGATTTTGTAGGAATTATATGTTTATTGGTGATTAACTCCACAATCAGTTTCATTGAGGAAAATAATGCAGGCAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCTAAGACTAAGGTGCTGAGGGATGGCAAATGGAGTGAGCAGGATGCAGCAATTTTGGTTCCAGGAGATATAATTAGTGTAAAGTTGGGAGATATTATCCCGGCGGATGCTCGGCTTCTCGAGGGCGATCCTTTGAAAGTTGATCAATCTGCATTGACTGGAGAATCACTTCCTGTTACCAAAAATCCAGGGGATGAAATCTTCTCTGGTTCAACTTGCAAACAAGGGGAAATTGAAGCTGTTGTAATTGCTACGGGTGTCCATACTTTCTTTGGAAAAGCAGCACATCTTGTAGACAGCACTCACCAAGTTGGTCACTTCCAAAAAGTGCTTACATCCATTGGGAATTTCTGTATTTGTTCCATTGCTTTAGGAATGTTTATTGAGATTATTGTAATGTACCCAATTCAACGTCGTAAATACCGTGACGGAATCGACAATCTTCTCGTTCTCTTGATCGGTGGAATACCAATTGCTATGCCTACTGTCCTGTCTGTCACAATGGCTATTGGATCTCATAAGCTATCCCAACAGGGCGCCATCACGAAGCGTATGACTGCCATTGAAGAATTGGCGGGTATGGATGTCCTTTGCAGTGATAAAACAGGGACATTGACTCTAAACAAGCTTAGTGTGGATGTAAATTTGATTGAGGTTTTTGCTAAGGGTGTGGATAAACAACATGTCATTTTGCTGGCTGCAAGAGCTTCTCGAATCGAAAATCAAGATGCAATTGATACTGCTATTGTAGGAATGCTAGCTGATCCTAAAGAGGCACGAGCAGACATCAGAGAAGTGCATTTCTTCCCATTCAATCCAGTGGATAAGAGAACTGCATTAACTTACATTGATTCTGATGGTAATTGGCATCGAGCAAGCAAAGGCGCTCCCGAGCAGATCTTAACACTTTGCAACTGCAAGGAGGATGTCAGGAAGAGGGCTCATTCTGTTATTGATAAATTTGCAGAACGCGGTCTTCGCTCGTTGGCCGTTGCGAGACAGGAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTCCATGGCAGTTTGTTGGCTTATTGCCTCTGTTTGATCCTCCAAGGCATGACAGTGGAGAAACCATCAAAAGAGCTCTTAATCTAGGAGTGAATGTCAAGATGATTACTGGTGATCAGCTAGCCATTGCCAAAGAAACTGGTAGAAGACTTGGAATGGGGACTAACATGTACCCATCCGCATCATTACTTGGTCAACACAAGGATGAAAGCATTGCAGGCCTTCCTGTAGAAGAGTTAATTGAAAAGGCAGATGGCTTTGCTGGAGTTTTTCCAGAGCACAAATACGAGATCGTAAGGAAGCTGCAGGAGAGGAAACATATTTGTGGAATGACCGGAGACGGTGTGAACGATGCTCCTGCATTGAAGAAGGCCGACATTGGAATTGCAGTTGCTGATGCAACTGATGCTGCTAGAAGTGCTTCTGATATTGTTCTCACAGAGCCAGGCTTGAGTGTTATCATCAGTGCTGTCCTTACAAGTAGAGCTATCTTCCAGAGAATGAAGAATTACACCATATATGCAGTTTCAATCACAATACGTATTGTGTTTGGCTTCTTGTTTATTGCCCTCATATGGAAATTTGACTTCTCCCCATTCATGGTTTTGATCATTGCCATTCTGAATGATGGTACAATCATGACCATTTCAAAGGATAGAGTGAAGCCATCTCCATTACCTGATAGTTGGAAATTGAAAGAGATATTTGCAACAGGCATTATGCTTGGAGGTTACTTGGCATTGATGACTATCATATTCTTCTGGGTAATGAAAGAGACAGAATTCTTCCCAGAGAAATTTGGTGTAAGATCTATTAAGGACAGTCCTAAAGAAATGATGGCTGCTCTTTACCTGCAAGTGAGTATTGTCAGCCAGGCCTTGATATTTGTGACTCGATCGCGCAGTTGGTCCTACGTAGAACGACCGGGGTTGCTACTGATGGGTGCTTTCGTTATTGCACAACTGGTAGCAACACTCATAGCAGTATATGCCAATTGGGGATTTGCAAAGATAAAAGGGGCTGGATGGGGATGGGCTGGTGTAGTTTGGATCTATAGTATTATTTTCTACATTCCATTAGACTTGATCAAGTTTGCAATTCGCTATATCCTTAGTGGCAAGGCTTGGCTTAACTTACTAGAAAACAAGACCGCGTTTACGACGAAGAAAGACTATGGAAGGGAGGAAAGAGAAGCTCAATGGGCTGCTACTCAAAGAACCTTACATGGCCTTCAACCAGCACCAGAAAGAACTAGTCTCTTCCTTGAAAAGAATAGCTACAGAGAGCTTTCCGAAATCGCGGAGCAAGCCAAAAGACGAGCAGAGATAGCTAGGCTTAGGGAGCTGAATACTCTGAAGGGTCATGTTGAATCAGTAGTGAAATTGAAAGGGCTGGATATTGATACAATCCAACAACATTACACAGTGTAA 2862 42.73 MAGKLSLEEIKNETVDLEKIPVAEVFEQLKCGPEGLTTQEGEDRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTHQVGHFQKVLTSIGNFCICSIALGMFIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLSVDVNLIEVFAKGVDKQHVILLAARASRIENQDAIDTAIVGMLADPKEARADIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQILTLCNCKEDVRKRAHSVIDKFAERGLRSLAVARQEVPEKRKESPGSPWQFVGLLPLFDPPRHDSGETIKRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIMLGGYLALMTIIFFWVMKETEFFPEKFGVRSIKDSPKEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLMGAFVIAQLVATLIAVYANWGFAKIKGAGWGWAGVVWIYSIIFYIPLDLIKFAIRYILSGKAWLNLLENKTAFTTKKDYGREEREAQWAATQRTLHGLQPAPERTSLFLEKNSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 953
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 25960637 25968043 + CcPI632755_06g015440.1 Cco06g1544 182144
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1544 953 Gene3D - 133 217 - -
Cco06g1544 953 SUPERFAMILY HAD-like 326 636 IPR036412 -
Cco06g1544 953 SFLD p-type atpase 312 640 IPR044492 -
Cco06g1544 953 FunFam Plasma membrane ATPase 342 489 - -
Cco06g1544 953 SFLD C1.7: P-type atpase like 312 640 - -
Cco06g1544 953 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Cco06g1544 953 Coils Coil 904 924 - -
Cco06g1544 953 FunFam ATPase 4 plasma membrane-type 574 816 - -
Cco06g1544 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 848 IPR023298 -
Cco06g1544 953 Gene3D - 902 953 - -
Cco06g1544 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Cco06g1544 953 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1544 953 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1544 953 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1544 953 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1544 953 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1544 953 Gene3D - 342 489 IPR023299 GO:0000166(InterPro)
Cco06g1544 953 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Cco06g1544 953 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Cco06g1544 953 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Cco06g1544 953 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Cco06g1544 953 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Cco06g1544 953 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Cco06g1544 953 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Cco06g1544 953 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Cco06g1544 953 Gene3D - 95 816 - -
Cco06g1544 953 Pfam E1-E2 ATPase 132 309 - -
Cco06g1544 953 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cco06g1544 953 NCBIfam HAD-IC family P-type ATPase 102 346 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1544 953 NCBIfam HAD-IC family P-type ATPase 564 678 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1544 953 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cco06g1544 953 Gene3D - 327 626 IPR023214 -
Cco06g1544 953 FunFam Plasma membrane ATPase 133 217 - -
Cco06g1544 953 FunFam Plasma membrane ATPase 482 637 - -
Cco06g1544 953 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Cco06g1544 953 PANTHER CALCIUM-TRANSPORTING ATPASE 18 876 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1544 Cco-Chr6:25960637 Cco08g1428 Cco-Chr8:26172280 0.00E+00 dispersed
Cco06g1544 Cco-Chr6:25960637 Cco06g1551 Cco-Chr6:26066522 8.00E-19 proximal
Cco11g1233 Cco-Chr11:24483315 Cco06g1544 Cco-Chr6:25960637 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1544 K01535 - csv:101221783 1762.27