Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1551 ATGGCGGCAGGAGAAGAGGAGGTGGCGGCCGCGGCGGCGTCGGGAGTGGCCGGAAAGAAGGGTGGCTGGTTGCAGAAAAGTTACTTTGATGTGTTGGGGATTTGTTGTTCTTCGGAAATTCCAGTGATTGAGAATATATTGAAGGAGATTGAAGGGATTAAAGAGATTAGAGTGATTGTTGCTACGAGAACTGTCATTGTTCTTCATGATAATCTTCTTGTTTCTCAAACACAAATTGTTAAAGCCCTAAATCAAGCAAGATTTGAAGCGAACGTTAGAGCGTACGGAGATCAGAAAGATCACCGGAAAAAATGGCCGAGCCCGTATGCGGTGGCGAGTGGGATGTTGCTGCTGCTGTCGTTACTGAAATATGTGAATCCTATTTTCCGATGGGTAGCTTTAGCCGCCGTTGCCGCCGGAATCTGGCCCATTGTCCTCAAAAGCTTCGCCGCCGTTCGCCATCTCAGAATCGACATCAACATTCTTGCTTTAATTGCAGTGATCGGGACAATTGTGCTGAAGGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACCATCGCCGAATGGCTCGAGTCCAGAGCTGCCCACAAGGCGAACGCCGTCATGTCATCCCTTCTAAGCATCGCTCCTCAGAAAGCGGTTCTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTCAAATTGGGGACTCTGCTGGCTGTGAAGGCCGGCGAAGACATTCCCATTGATGGAATCGTTGTGGAAGGAAAATGCGAAGTGGATGAGAAAACACTTACTGGTGAATCTTTCCCTGTTCCCAAACAGAAGAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTAAAGACTACTGCGCTTGCTGAAGACTGTGTGGTGGCCAAAATGGCTAAGCTGGTTGAAGAGGCCCAAAACAATAAATCTAGGACTCAAAGGTTCATTGACAAATGTGCCAAATTCTATACTCCAGCTGTTATAATCATATCAACTTGCATAGTAGTGATTCCAATTGCTTTGAGACTTCCCAATCACAGCCATTGGTTTCACTTGGCCCTGGTTGTGTTAGTAAGCGCGTGTCCCTGTGCACTCGTCCTTTCCACGCCTGTTGCGTCTTTCTGTGCACTTACTAAGGCAGCAACATCTGGTCTTTTAATTAAAGGAGGTGACTACCTTGAAACTCTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATATAAGCTTAGACACCTTGCTATATTGGGTGTCAAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCGTTGATCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTTCCTGGAGAAGGTGTTCATGGGAGAATTGATGGGAAAGAAATTTATATTGGAAATCGAAAAATTGCTACAAGAGCCAACTGTGCAACAGTCCCAGAGATCAAAGATGAAGCAAAGGATGGAAGGACTGTTGGATACATATTCTGTGGAGCTACTGCAGCTGGAATCTTTAGTCTATCTGATTCTTGCAGAACAGGAGCTAAGGAGGCCATGGATGAGCTTCGATCTCTCGGTATAAAAACAGCCATGCTCACAGGAGACTGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTACAAACAGTCCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTTAAAAAGGAGGGACCAACAGCTATGATTGGAGATGGTTTGAACGACGCCCCTGCCTTGGCCACAGCTGATATTGGTATATCAATGGGAATCTCAGGTTCAGCCCTCGCAATAGAAACTGGAGATGTAATTCTTATGACTAATGATATCAGGAAAGTTCCAAAAGCCATTCGACTTGCAAGAAGAGCTAATAATAAAGTAATCGAAAATGTGATTCTGTCGATTGCTCCTAGGATTGCTATACTCGGCCTAGCATTTGGTGGTCATCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTCGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACTGACGGACCCAAGGGGAAAAAAGGTGGCAAGTTTTCTGCTACTCACTGTTCCTCCAAACATAAATGCTGTGATGTTAGTAGCCATTCAGATGAATATAGTGGCCACACCCATGATCACGGGTGCGACAATCACAGTTCCCACTCTTCTAGACATCGTCACCGTCACCATCACCATGAGCACGAGGACTGCACCTCTCTCAAGAAAACTCATGATGGTTGTTTACCTCAGAACCATGCTTCCAAGTGTGTCTCCAGGTTGAAAAATTCAAGTTTATGCAAGAAAAGTAAACTCGTGGACTCAAGTTCTAAGGTAGATGGTTCTACCGGCAATGTAAACCTCTGTGAACATGATCACGGTTGCAACACTGACAGCTCCGACTCTTCTAGTCATAGTCGTCGTCATCACCACCACCACCATCATCATGAGCACGATGACTGTGGCTCTCTCAAGAAAACTCATGAAGGTTGCTTACCTCAGAACTGTTCTTCCAAGTGTGATTCCGGGATGAAAACTTCAAGTTCATGGAAGAAAAGTAAACTCGTGGAGTCAAGTTCTAAGGTAGATGATTCTGCAGGCAGTCTAAAACTGTGTGAACATGGACATGTCCATAACGACCAGCCAGCTGATCATGACCATCATGCTTATTCTTCGTGCGCACATCATGTCGAGAACAAACATTGCTCTCCAAAGATTACACAAGAGTTTTGCTCGTTTCAGAAGCGTGCATCAAATTCATGTGAGAAAATCAAGTGCACAAGCTCAGCTGCAACCCTTGATGGGTCTGCTGTCATTCTTGAGCTCTATGAAAGTGGATGTTGTTCTCATAATGACCAATCTGCTCAACATGATCATGACATCCAAACTCCCAAATGTGATTTGGATGACAGCCACTCATCCAGTCCTGAGCATCATGTTGGTAATGGTTGTAGCTCTCAAAAGAACCATGAGCATTGCCACCAAGGAAGCTTCGACACTTCAGATTTCATCTTGGAATCCCATGAAAAGCACAGGAAAAATTGCAGTGGACCTTGTAAATCAAAAGCAATAAGCGGGTGCACAGACGATGAATGCAGGGAAAAGGTTGAAATGATAGATGATTGCGCTGAAGCAAACAGGCACCACAAAACGAAACAACATCATTGCGATACTCATTTGAGTCTTCAAAATGAAGGGGTTCATCCTCATTGTAAGGCATCAAATGGAGATAATAATGGAGCAATCAACAATACAGTTAATATCGAGCTCGAAGCACACCATTCAAACCCAGAATGCCCCAGCACTTGTAATAAGGCTTCGGAAAACAACGGGACAAACAACTGTAAAAGCTGCAAAAGGGGAAGCTCACAACTCAAAATTGGAAAATCTTGTGCAGGTTTGGATAAGAGAAAAATGGGTGGGTGTTGTAAGAGCTACATGAAGGAGTGTTGTAGGAAGCATGGCGATATCAGAATGGCGGTCCGAGGAGGCTTAAACGAAATTATTATAGAATAG 3639 44.71 MAAGEEEVAAAAASGVAGKKGGWLQKSYFDVLGICCSSEIPVIENILKEIEGIKEIRVIVATRTVIVLHDNLLVSQTQIVKALNQARFEANVRAYGDQKDHRKKWPSPYAVASGMLLLLSLLKYVNPIFRWVALAAVAAGIWPIVLKSFAAVRHLRIDINILALIAVIGTIVLKDYLEAATIVFLFTIAEWLESRAAHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKCAKFYTPAVIIISTCIVVIPIALRLPNHSHWFHLALVVLVSACPCALVLSTPVASFCALTKAATSGLLIKGGDYLETLGKIKIMAFDKTGTITRGEFMVTEFQVLDKDNISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSVDPKPENVDDFQNFPGEGVHGRIDGKEIYIGNRKIATRANCATVPEIKDEAKDGRTVGYIFCGATAAGIFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDCSAAALQAQKELGKALQTVHAELLPEDKTRLINDFKKEGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKVPKAIRLARRANNKVIENVILSIAPRIAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTDGPKGKKGGKFSATHCSSKHKCCDVSSHSDEYSGHTHDHGCDNHSSHSSRHRHRHHHHEHEDCTSLKKTHDGCLPQNHASKCVSRLKNSSLCKKSKLVDSSSKVDGSTGNVNLCEHDHGCNTDSSDSSSHSRRHHHHHHHHEHDDCGSLKKTHEGCLPQNCSSKCDSGMKTSSSWKKSKLVESSSKVDDSAGSLKLCEHGHVHNDQPADHDHHAYSSCAHHVENKHCSPKITQEFCSFQKRASNSCEKIKCTSSAATLDGSAVILELYESGCCSHNDQSAQHDHDIQTPKCDLDDSHSSSPEHHVGNGCSSQKNHEHCHQGSFDTSDFILESHEKHRKNCSGPCKSKAISGCTDDECREKVEMIDDCAEANRHHKTKQHHCDTHLSLQNEGVHPHCKASNGDNNGAINNTVNIELEAHHSNPECPSTCNKASENNGTNNCKSCKRGSSQLKIGKSCAGLDKRKMGGCCKSYMKECCRKHGDIRMAVRGGLNEIIIE 1212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26066522 26072901 + CcPI632755_06g015510.1 Cco06g1551 182151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1551 1212 Pfam E1-E2 ATPase 218 387 - -
Cco06g1551 1212 CDD P-type_ATPase_HM 109 711 - -
Cco06g1551 1212 SUPERFAMILY Calcium ATPase, transmembrane domain M 159 402 IPR023298 -
Cco06g1551 1212 SUPERFAMILY Calcium ATPase, transduction domain A 222 307 IPR008250 -
Cco06g1551 1212 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872(InterPro)
Cco06g1551 1212 Gene3D - 197 311 - -
Cco06g1551 1212 SFLD Haloacid Dehalogenase 391 661 - -
Cco06g1551 1212 FunFam Putative cadmium/zinc-transporting ATPase 3 21 94 - -
Cco06g1551 1212 NCBIfam heavy metal translocating P-type ATPase 159 712 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cco06g1551 1212 ProSitePatterns Anaphylatoxin domain signature. 1158 1192 IPR000020 GO:0005576(InterPro)
Cco06g1551 1212 NCBIfam HAD-IC family P-type ATPase 182 687 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco06g1551 1212 FunFam Copper-transporting ATPase 1, putative 197 311 - -
Cco06g1551 1212 Gene3D - 23 94 - -
Cco06g1551 1212 PRINTS P-type cation-transporting ATPase superfamily signature 408 422 - -
Cco06g1551 1212 PRINTS P-type cation-transporting ATPase superfamily signature 633 645 - -
Cco06g1551 1212 PRINTS P-type cation-transporting ATPase superfamily signature 555 565 - -
Cco06g1551 1212 PRINTS P-type cation-transporting ATPase superfamily signature 257 271 - -
Cco06g1551 1212 PRINTS P-type cation-transporting ATPase superfamily signature 609 628 - -
Cco06g1551 1212 MobiDBLite consensus disorder prediction 840 864 - -
Cco06g1551 1212 ProSitePatterns E1-E2 ATPases phosphorylation site. 410 416 IPR018303 -
Cco06g1551 1212 Gene3D - 399 660 IPR023214 -
Cco06g1551 1212 Gene3D - 419 541 IPR023299 GO:0000166(InterPro)
Cco06g1551 1212 ProSitePatterns Hypothetical cof family signature 2. 609 631 - -
Cco06g1551 1212 MobiDBLite consensus disorder prediction 1000 1028 - -
Cco06g1551 1212 NCBIfam cadmium family heavy metal-translocating P-type ATPase 159 714 - -
Cco06g1551 1212 SUPERFAMILY HAD-like 408 710 IPR036412 -
Cco06g1551 1212 SUPERFAMILY HMA, heavy metal-associated domain 24 96 IPR036163 GO:0046872(InterPro)
Cco06g1551 1212 MobiDBLite consensus disorder prediction 750 779 - -
Cco06g1551 1212 FunFam Putative cadmium/zinc-transporting ATPase 3 419 541 - -
Cco06g1551 1212 SFLD p-type atpase 391 661 IPR044492 -
Cco06g1551 1212 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 24 944 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Cco06g1551 1212 Pfam haloacid dehalogenase-like hydrolase 404 623 - -
Cco06g1551 1212 MobiDBLite consensus disorder prediction 1000 1017 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1551 Cco-Chr6:26066522 Cco10g0892 Cco-Chr10:18632681 7.70E-59 dispersed
Cco06g1544 Cco-Chr6:25960637 Cco06g1551 Cco-Chr6:26066522 8.00E-19 proximal
Cco02g0808 Cco-Chr2:9012068 Cco06g1551 Cco-Chr6:26066522 4.70E-55 transposed
Cco02g0871 Cco-Chr2:10357040 Cco06g1551 Cco-Chr6:26066522 1.20E-50 transposed
Cco11g1224 Cco-Chr11:24327117 Cco06g1551 Cco-Chr6:26066522 1.50E-282 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1551 K01534 - csv:101211188 1724.91