Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1558 ATGAGAGGTGTTGAAAGGAGATTGATTGAGAAGGAATCTGGAAAGTGTTCTCACGCCAAGCTGGAAACCGGATCAGAGTTGATCTTTCCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAGTCACATTCACAGCCAATTTGTTCAACATTCAAGAGGAGACCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGGCAATTGGCTGGTAAAAAATTTCGGCTAAAAAAACTAGATACAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCGAGGTGGAAAATCTCCGTCATCAACTAATACGAAAGGGAATGCAGAAAACATTGAGCCGGTGGTCAAGAAAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACGAGATACCTTATAATTAAAATGAAGGCAGAGCAAAACCTTATTGATGCGTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTACAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACAAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGATGATTGGCCCTCCGATGATTCTGAAGATGATGACTATGATCCAGATAAGAAGGAGAAGGGCTATGACAACGCAAGTGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGACGAGGATTTAACTGCTAGAGATGGTATTGGATGTGAAGATCACTTCGGTGCCGGTAGCAGCATGGTGTCTGATGGATCCAATGAGGAGGGTATCACATGCGGCCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGCTGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGTGAAAAAAAAAGTCAGGACATTGACATGGAAGCAGAGAAAAAACTTAACAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTCGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCGGAGGGAGCAGCACAACCCCACAGTTCTCATAAGACTTCCAATGAGTCCAGGTTAGCAGATTCAAAGGAAATGTCTGCGAACCTTCTTTCATTAGAGGATGCACCAATAAAAGAACTGCAGCTGAAATTGCGCGGAAGTCATTGCAAGAAAAAGCAGCACAGAAAATCATCACTTGTTTCTTCCAACTATGACAAGGATGGTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGCCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATTATGGGATTTTAGATAGGTCATACATGTTTGAACAGCCTATTGTATATGTTCCTGTAGCAGTGTTAAAGGAAAAGTTTTACGCCGGTAAGGGAATAGCTATGACGTTCTCCAAGAGAAAACGAGACAAAAAGCCAGCAGAAGAAGATGGTAAATGGCTCACATCATATTTAGTTCCTTCATTTGCAACATACAAGATATTACTATTACACTGCTTCTTAAGGTTGTGCACATCACTTCTGCTCTTGGCCTCATCCAATTTCCGTCTTTTGGAAGCTAACCGAGGCCTCAACTACAAATCCAGAGAGAGAGAATGA 2382 40.93 MRGVERRLIEKESGKCSHAKLETGSELIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFRLKKLDTKSSKELLLSKLRGGKSPSSTNTKGNAENIEPVVKKNQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKAEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILKYKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSLNISWEDVFKEEAAFPDGGNALLNHEDDWPSDDSEDDDYDPDKKEKGYDNASGEENDKDVLEESSSSTSLSWSLDDEDLTARDGIGCEDHFGAGSSMVSDGSNEEGITCGRRQRQAVDYKKLYAEMFGKDAPPHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLNNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGAAQPHSSHKTSNESRLADSKEMSANLLSLEDAPIKELQLKLRGSHCKKKQHRKSSLVSSNYDKDGFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRLSNKKDYGILDRSYMFEQPIVYVPVAVLKEKFYAGKGIAMTFSKRKRDKKPAEEDGKWLTSYLVPSFATYKILLLHCFLRLCTSLLLLASSNFRLLEANRGLNYKSRERE 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26156484 26165179 + CcPI632755_06g015580.1 Cco06g1558 182158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1558 793 MobiDBLite consensus disorder prediction 99 147 - -
Cco06g1558 793 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 35 710 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Cco06g1558 793 MobiDBLite consensus disorder prediction 350 372 - -
Cco06g1558 793 ProSiteProfiles 'Homeobox' domain profile. 495 555 IPR001356 GO:0003677(InterPro)
Cco06g1558 793 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Cco06g1558 793 Gene3D - 497 569 - -
Cco06g1558 793 CDD PHD_PRHA_like 239 291 IPR045876 -
Cco06g1558 793 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Cco06g1558 793 FunFam pathogenesis-related homeodomain protein 497 561 - -
Cco06g1558 793 MobiDBLite consensus disorder prediction 38 74 - -
Cco06g1558 793 MobiDBLite consensus disorder prediction 106 120 - -
Cco06g1558 793 FunFam pathogenesis-related homeodomain protein-like 231 291 - -
Cco06g1558 793 SMART PHD_3 239 292 IPR001965 -
Cco06g1558 793 MobiDBLite consensus disorder prediction 437 462 - -
Cco06g1558 793 MobiDBLite consensus disorder prediction 330 385 - -
Cco06g1558 793 CDD homeodomain 503 556 IPR001356 GO:0003677(InterPro)
Cco06g1558 793 SMART HOX_1 497 559 IPR001356 GO:0003677(InterPro)
Cco06g1558 793 Pfam Homeodomain 506 550 IPR001356 GO:0003677(InterPro)
Cco06g1558 793 SUPERFAMILY FYVE/PHD zinc finger 230 297 IPR011011 -
Cco06g1558 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Cco06g1558 793 MobiDBLite consensus disorder prediction 556 579 - -
Cco06g1558 793 Pfam PHD-finger 240 291 IPR019787 -
Cco06g1558 793 SUPERFAMILY Homeodomain-like 498 561 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1205 Cco-Chr5:11210235 Cco06g1558 Cco-Chr6:26156484 1.60E-57 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59523 PF00628 PHD 1.30E-09 CL0390 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1558 - - - 0.0