Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1562 ATGGATAGTATCGGAGAGGATTACTTGAATTCCTTTGGAGGTGACATCTTCATAGCAACCGAAGAGTTCGACAGTTGGGAATTCGACGAGCCGGTTTCTGGCTATTATGATTCGAGTTCGCCGGAGGGATTTCTGTCGTCGTCGGCGGCTTCGAAGAACATAGTATCAGAAAGGAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCGAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGAAAGTTAAAGAAGATAGCAGGGTATGAATTTGACCAGGAGCTTCCCTCGTTGCTCAGATCAAAGAGGAAGAAAACTGAACGGTACATCAGCTATGATTCTTCTGCTTCAAGAATTTCCCCCGTTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGGCCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTATTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTCAAGGATCCACATAGCCCCATGAGTATCTGA 738 43.22 MDSIGEDYLNSFGGDIFIATEEFDSWEFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIEDLHEQERRIQAEIYELESGKLKKIAGYEFDQELPSLLRSKRKKTERYISYDSSASRISPVEVLDLSVTYMGDRTIVVSMACCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLKDPHSPMSI 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26208841 26212826 - CcPI632755_06g015620.1 Cco06g1562 182162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1562 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Cco06g1562 245 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983(InterPro)
Cco06g1562 245 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Cco06g1562 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 223 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco06g1562 245 Gene3D - 46 114 IPR036638 GO:0046983(InterPro)
Cco06g1562 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 112 IPR036638 GO:0046983(InterPro)
Cco06g1562 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1562 Cco-Chr6:26208841 Cco10g0087 Cco-Chr10:768670 4.20E-12 dispersed
Cco02g2312 Cco-Chr2:35600866 Cco06g1562 Cco-Chr6:26208841 4.50E-16 transposed
Cco05g2804 Cco-Chr5:35772790 Cco06g1562 Cco-Chr6:26208841 8.60E-17 transposed
Cco11g1204 Cco-Chr11:23669127 Cco06g1562 Cco-Chr6:26208841 1.20E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59525 PF00010 HLH 1.60E-11 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1562 - - - 0.0