Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1572 ATGGCGGTGGATCTCGCAGCTTTTCCGGCCAAGATGGATGATCAAACCGCCATTGAAGAAGCCGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCTTCTCTTATCCAAACAACAACACTCTCAAACTCTTAATAACAATCTCAATTACTCTGGCCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTCTTAAACCGTACCGGCCACGCTAGATTCCGCCGTGGACCCTCCGATTCCCCAAATCCCGTCCTCAATTCTCTCGATCCACCTCTCAAAACCCATTTCCCTAAACCTAATTTCTCCCCTGCTTCCAAATTCCCTGATTCTAAGGATTCCACTACCACCTCTTCTTTTGTTTCCACGATCACCGGCGACGGCAGCGTTTCTAACGGCAAGGTTGATCTCTCGGTCTTTGCGACGCCGGCGGTGTCCGGTGGTAAACCACCGTTGGCGTTGAAGAGGAAGTGCGATGATAGCTCTGGATTTGGTTGTAAGGTTCCGTCGAAGCTCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGTGAAGAAGACGGTAAAAGTTCCGGCGATCAGTTCTAAGATCGCTGATATACCTTCCGATGAATACTCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCACCTTATCCTAGAGGGTATTATAGATGCAGCACCGTGAAAGGATGTCCGGCGAGGAAAAAGGTGGAAAGAGCTCGTGACGATCCGACGATGCTCCTCGTAACTTACGACGGAGATCACCGTCACCCGCACCCTACGGTGACCGATGCCAGCGTGGGTGTCGTTTCCCAGAAGAGTTGA 837 50.54 MAVDLAAFPAKMDDQTAIEEAASAGLQSMEHLILLLSKQQHSQTLNNNLNYSGLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPLKTHFPKPNFSPASKFPDSKDSTTTSSFVSTITGDGSVSNGKVDLSVFATPAVSGGKPPLALKRKCDDSSGFGCKVPSKLCHCAKRRKSGVKKTVKVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHPHPTVTDASVGVVSQKS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26313127 26314512 - CcPI632755_06g015720.1 Cco06g1572 182172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1572 278 Pfam Plant zinc cluster domain 158 201 IPR018872 -
Cco06g1572 278 MobiDBLite consensus disorder prediction 255 278 - -
Cco06g1572 278 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1572 278 SUPERFAMILY WRKY DNA-binding domain 201 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1572 278 MobiDBLite consensus disorder prediction 75 117 - -
Cco06g1572 278 Gene3D WRKY domain 190 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1572 278 FunFam WRKY transcription factor 65 187 264 - -
Cco06g1572 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 267 IPR044810 GO:0003700(InterPro)
Cco06g1572 278 SMART WRKY_cls 203 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1572 278 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1572 Cco-Chr6:26313127 Cco07g0068 Cco-Chr7:661271 1.70E-38 dispersed
Cco06g1572 Cco-Chr6:26313127 Cco05g2915 Cco-Chr5:36685428 2.20E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59526 PF03106 WRKY 1.20E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1572 - - - 0.0