Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1583 ATGGGAGATCATCAAGATGAGGTATGCAATATCAGCTGGCTTAGCCTTGGTTTGGGATTTGGTGAATATGTCCCAAAAAAGATGCAAAAAATCAACAATAAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAAGTCTCTTTCACTCTCATTCCAAAAGAAGAATTGGGTATTAACAATAACGACGACGACAACAACAACATCAATATGGAAATTGACGATGAAGCTAATTCAAGTGAAGAAGATGATCATCATTTGATGAAGAGAATTAGAAGCAATAATAATTTTGTTAATTATGATCAAGATTCCTCCTTTGGAATTAGAAGATCATCATCAGATCATCATCATCAGTACAACAACAACAACAACAAAAATATTATTACTACTAATCATAATTATAAGGGGATTAGTAGTAGTAGTGGATCAGAATTAAGGGAGAGAAAAAAGCTTAGGCTTTCCAAAGAACAATCCACTTTGCTGGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACAGAAGTAGATTGTGAGTTTTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAACCGAAGGTTGAAGAAAGAATTGCATGAATTAAGATCCCTTAAACTTGGAGCTTCACAATTGTACATTCAGCTGCCCAAGGCGGCCACACTCACAATTTGCCCTTCATGCGACAAAATTACAAGGACGGCCGCCGCCAACGCCGCCGCCGTCGACGCTAATTCTCCGCCACAATAA 843 38.67 MGDHQDEVCNISWLSLGLGFGEYVPKKMQKINNKQQQQQQQQQQQVSFTLIPKEELGINNNDDDNNNINMEIDDEANSSEEDDHHLMKRIRSNNNFVNYDQDSSFGIRRSSSDHHHQYNNNNNKNIITTNHNYKGISSSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSLKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAAVDANSPPQ 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26405633 26407207 + CcPI632755_06g015830.1 Cco06g1583 182183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1583 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 268 IPR050762 -
Cco06g1583 280 MobiDBLite consensus disorder prediction 101 150 - -
Cco06g1583 280 FunFam Homeobox-leucine zipper protein 18 132 208 - -
Cco06g1583 280 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677(InterPro)
Cco06g1583 280 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco06g1583 280 Pfam Homeobox associated leucine zipper 203 236 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1583 280 Pfam Homeodomain 147 201 IPR001356 GO:0003677(InterPro)
Cco06g1583 280 SMART HOX_1 145 207 IPR001356 GO:0003677(InterPro)
Cco06g1583 280 SMART halz 203 246 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g1583 280 CDD homeodomain 147 204 IPR001356 GO:0003677(InterPro)
Cco06g1583 280 SUPERFAMILY Homeodomain-like 136 204 IPR009057 -
Cco06g1583 280 Coils Coil 202 236 - -
Cco06g1583 280 Gene3D - 138 208 - -
Cco06g1583 280 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1583 Cco-Chr6:26405633 Cco10g0785 Cco-Chr10:14746659 9.20E-40 dispersed
Cco06g1583 Cco-Chr6:26405633 Cco09g0363 Cco-Chr9:3298066 4.90E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59527 PF00046 Homeodomain 1.10E-15 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1583 K09338 - csv:101203427 379.022