Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1585 ATGCCTCGCCGAATACTTCAAGGAACCTCTGAAGATCAGATGAAGAGCTCTTCATCACTGCTACATGCTCCAGTTTTCTTCTTCTTCCTTGGAATGCTAGCTGTGCTGGTAATATTGTTGATTCTCCTATTGATCTTTAGGAAATCTCTCAAACAAAATAAGGTGGTGAAGTTATTAAGACAAACTGGAACAACTCAAGCATCAGCAGATTTGTTGAGCGAGAACCTGCAGTCATTAAGTTACTTTGACTTTCACACACTTAGAAAGGCAACCAAGAATTTTAATCCGACAAATCTTCTAGGCCAAGGAGGATTTGGACCCGTCTATCTGGGAACACTAGAAGATGGAAGATTGGTTGCAATAAAGAAACTTTCCCTAAACAAATCCCAACAAGGAGAACCAGAATTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGTCTACTTGGTTGTTGCTCTGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAACAGGAGTTTAGATCTCATAATATATGGTGGAAGTGACCAATTCCTCAACTGGAATACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTACCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAAATTTCAACCAAAGATTGGTGATTTTGGGCTGGCCAGGTTCTTCCCTGATGACCAAGCTTACCTTAGCACTACATTTGCTGGAACTCTAGGTTACACAGCGCCGGAATATGCAATTAGGGGAGAACTGTCAGAGAAGGCAGATGTATACAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGCAGGAAAAACACAAATCTTTCTTTACCAACCGAAATGCAGTATCTTCCTGAATATGCATGGAAACTATATGAGAGATCTGCACTCACCGAACTAGTGGATCCAAGGATGAAGGATGGTGGATATGTGGAGAAGAATGTAGCACATGCAATTCATGTTGCTTTGTTATGCCTTCAACCACATGGCAATCTAAGACCTGCAATGTCTGAGATTGTTGCGATGCTAACATACAAATTTGAAATTGTTCAAACGCCTTTGAAACCAGCTTTCTTGGAAAGAAGGCATAGAAGGAACAAAGATCTCTCGTTGACTAATTATGCAGAAAACACTCCATCTCCTTTACAGTGA 1218 41.05 MPRRILQGTSEDQMKSSSSLLHAPVFFFFLGMLAVLVILLILLLIFRKSLKQNKVVKLLRQTGTTQASADLLSENLQSLSYFDFHTLRKATKNFNPTNLLGQGGFGPVYLGTLEDGRLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLDLIIYGGSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSALTELVDPRMKDGGYVEKNVAHAIHVALLCLQPHGNLRPAMSEIVAMLTYKFEIVQTPLKPAFLERRHRRNKDLSLTNYAENTPSPLQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26425038 26427063 + CcPI632755_06g015850.1 Cco06g1585 182185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1585 405 Gene3D Transferase(Phosphotransferase) domain 1 171 374 - -
Cco06g1585 405 Gene3D Phosphorylase Kinase; domain 1 64 170 - -
Cco06g1585 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1585 405 Pfam Protein kinase domain 97 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1585 405 FunFam Cysteine-rich receptor-like protein kinase 2 171 373 - -
Cco06g1585 405 SMART serkin_6 94 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1585 405 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 388 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cco06g1585 405 CDD STKc_IRAK 100 366 - -
Cco06g1585 405 FunFam Cysteine-rich receptor-like protein kinase 10 59 170 - -
Cco06g1585 405 SUPERFAMILY Protein kinase-like (PK-like) 74 366 IPR011009 -
Cco06g1585 405 ProSiteProfiles Protein kinase domain profile. 94 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0542 Cco-Chr1:5265459 Cco06g1585 Cco-Chr6:26425038 5.80E-48 dispersed
Cco05g2819 Cco-Chr5:35875949 Cco06g1585 Cco-Chr6:26425038 1.00E-78 dispersed
Cco06g1585 Cco-Chr6:26425038 Cco09g2464 Cco-Chr9:38806239 6.90E-89 dispersed
Cco06g1585 Cco-Chr6:26425038 Cco11g1783 Cco-Chr11:30552622 3.60E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86936 PF00069 Pkinase 9.30E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1585 - - - 0.0