Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1587 ATGTACATTCTTGTAACTGTTAGATCCACGATATCGGTTGGCTCCGACCTGATCCGACCCTCGAAATTGAGCGTCGGGATGAAGAAAAGTGAGGAGGAGTGTTATAGTGAAGAGTGGAGGAAGGAAAGGAAAGGAAAGGAAAGGAGTGGCGTTGGCAAACTGAACCAACGGGGGCGGGGACCGATCCAATGGTCTGCTCTGTTGCACGCAGGCCCCCAACATCAGTCACGTGCTAGGTTACCTCCGGGGCCCACATTCACTTCTGCCACGTCACCATCCTCCCTTCTACAGTACATGGGCGCCCTTCCCAATCCCTTCTCCTTCTTCTCTCTCTTCTCTCTAGTTTTCCTCTTCACCGCCGTCTCACCCGCAACTTCTACCACCAGCCACCGACTTCTTAAGCTTATCCTGCCCCACCCTTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCGCCGCCACCGCCGTCGTTTCCTTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTCCATTCCGGCCAAGCATGGCAGTGGTGGTGGGTGTTCTGACCACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCCGTGATCGAATCGTTGCCGATTTTCCGATTTGGGTCGTTGAGTGGGCAAAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAAGTTCTGAGACTTCTCCCTAAATGCAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCTCTATGTCGCTACAGAGTCGACCCAGAGGACGTCTTATTAGTCGAAGACGTCAATATATTTCTCCACAATCCACCACCTCCTCCGCCACGGGGATCGTATTCCAAGGATGTTGTGTTGAACTTAGAACAGGGAAGAAGAAGCGGAAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCGTCTGTCGGCGAGAAGAGAACAGGGGAGTCCAGTTACCGTGATCCAGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGAAACGGTAGCTGTCGGATGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGAGGAGAAAACAAATCAGAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCGCCGAGGCCGCCGGTACTGGTACAAGGGCAACAGAGATGGAGCGATGTACAAGCTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCTGATAGCCGCAGATTTTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGACCGGGATGATGATGATGGCAGATGTGTAA 1479 52.87 MYILVTVRSTISVGSDLIRPSKLSVGMKKSEEECYSEEWRKERKGKERSGVGKLNQRGRGPIQWSALLHAGPQHQSRARLPPGPTFTSATSPSSLLQYMGALPNPFSFFSLFSLVFLFTAVSPATSTTSHRLLKLILPHPLKETVFVASPSPPPPPSFPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHNPPPPPPRGSYSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVAVGCFDRHRKDGLLLPEEKTNQNQNQNRLEHRIIVSPRPPVLVQGQQRWSDVQASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGMMGKHAGKGTGMMMMADV 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26433650 26435430 - CcPI632755_06g015870.1 Cco06g1587 182187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1587 492 MobiDBLite consensus disorder prediction 355 369 - -
Cco06g1587 492 Pfam Ring finger domain 256 299 IPR001841 -
Cco06g1587 492 FunFam RING-H2 finger protein ATL43 232 306 - -
Cco06g1587 492 SUPERFAMILY RING/U-box 238 304 - -
Cco06g1587 492 MobiDBLite consensus disorder prediction 340 369 - -
Cco06g1587 492 CDD RING-H2_EL5-like 256 299 - -
Cco06g1587 492 ProSiteProfiles Zinc finger RING-type profile. 257 299 IPR001841 -
Cco06g1587 492 SMART ring_2 257 298 IPR001841 -
Cco06g1587 492 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 154 459 - -
Cco06g1587 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 306 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1587 Cco-Chr6:26433650 Cco09g1187 Cco-Chr9:11805039 2.60E-21 dispersed
Cco06g1587 Cco-Chr6:26433650 Cco06g1008 Cco-Chr6:13854480 2.70E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1587 K19041 - csv:101203916 642.499