Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1604 ATGGCACGCCCATCTACCCCGCCCCCCACCGCCCTCTTTCTCATTCTCATTCTCATCATCTCATTGGTGGAGCAGCTCATTGTTTCTTGCACCGCTTCTACCGATGCAGAAGCGCTTCTTAAGTTCAAGAGCTCTCTTGAAATTACCAATGATGCATTGGGGAATTGGGCTACGGGGTCGTCCCCTTGCTCCGGCGATAAGGCGAATTGGATCGGTATTCTTTGCGAGAAGGGAAATGTTTGGGGATTGAAGCTTGAGAATATGGGGCTCAAGGGGAATATTGATATTGAGTCCCTTGAAGGGGTGCCTCATTTAAGGACAATTAGTCTTATGAACAATCATTTTCAAGGGTCTTTGCCTGATGTAAAGAGACTTGGGGCATTGAAATCTTTGTATTTGTCAAGAAATCATTTCTCAGGGAACATTCCTGGGGATTCATTTTCAAGTATGTTGTCTTTGAAGAAAGTGCATTTGGCTCAGAATGAGTTGGAAGGTCAAATTCCTTGGTCTCTGGTTGAATTGCCTCGTTTGTTGGAGTTGAGGCTTGAAGGAAATAAGTTTTCTGGCCAAATTCCTCATTTTCATCAAAACACAATCAAGTCCTTTAATGTCTCTAATAATGACCAACTTCATGGCCCAATCCCACAATCCCTTTCCCACATGGATCCATCCTCCTTCTCAGGCATTGAAGGTTTATGTGGACCGCCACTTAATAAACCATGCAACACCTCAAAGATGCCATCAATTGGGAGCATTATCATGGTTTCAATAGCTGTGACATTGGCTCTGCTTGCCATTGGTGCAGGAATAGTCATCCTTGGCCGTCGGAACCAATCGTCGTCTAACGAAGAGGATCCAGCCCATGGCAAATCTCCATGTGCTAGTGAGTTAGATCCGGGAGTCGGGTCGAAGTCACCGGACCGTGGTTCCAGCCACGGAAGCGGGTCGGGGAAACGGTCAGCCGAGAGTGCTAAATTGTCATTTGTAAGAGAGGACTCAGAGAAGTTTGATTTATCAGATTTGCTTAAAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAGGCAGCCTTGACCAATGGACCTGTCATGGTGGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAGAGAGGAATTCCAAGAACATATGAGAAGAATTGGAAGATTGAAACACCCCAATTTGCTTCCTCTTGTGGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATAACAAACTATGTTGAGAAAGGCAGCTTGGCTGTTCAACTTCATGGACACCAAGCTGTGGGTCAACCAGCCCTGGAATGGCCTGCAAGGTTGAAGATCATCAAGGGCATTGGAAAAGGTCTTAGGTATCTGTACAGTGAGCTTCCAAGTTTGATAACCCCACATGGCCATCTCAAGTCTTCAAATGTGCTTCTTAAGGCGAATTATGAGCCGCTTCTTTCGGACTACGGCCTGATACCGGTCGTGAACCAAGAGCACGCTCATGAGCTAATGGTGGCTTACAAATCGCCAGAGTATTCACAACAAGGTCGCATCACAAAGAAGACAGATGTGTGGTGCTTTGGGCTGTTGATCCTAGAGATTCTAACAGGGAAATTCCCAGCTAACTTTTTGCATCAGAACAAGAGTGGTGATGAGGAAGATTTAGCTAGTTGGGTCAAAACCATTCCTGAAAAAGAATGGAACAGCCAAGTGTTTGACAAAGAAATGGGTCCAACCAAGAGCAGTGAGGGTGAAATGTTGAAACTTCTCAGGATTGCAATGGCGTGTTGCGAAAGCGACTTCGAGAAGCGGCTGGATTTACGAGAAGTCGTGGAGAAGATTGAGGAAGTAAAAGAAAAAGATGGGGATGAAGATTTCTATTCTTCATATGCAAGTGAAGCTGATATTAGATCTTCAAGAGGATTATCTGATGAACTCAACTTCACCATGTGA 1956 44.84 MARPSTPPPTALFLILILIISLVEQLIVSCTASTDAEALLKFKSSLEITNDALGNWATGSSPCSGDKANWIGILCEKGNVWGLKLENMGLKGNIDIESLEGVPHLRTISLMNNHFQGSLPDVKRLGALKSLYLSRNHFSGNIPGDSFSSMLSLKKVHLAQNELEGQIPWSLVELPRLLELRLEGNKFSGQIPHFHQNTIKSFNVSNNDQLHGPIPQSLSHMDPSSFSGIEGLCGPPLNKPCNTSKMPSIGSIIMVSIAVTLALLAIGAGIVILGRRNQSSSNEEDPAHGKSPCASELDPGVGSKSPDRGSSHGSGSGKRSAESAKLSFVREDSEKFDLSDLLKASAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITNYVEKGSLAVQLHGHQAVGQPALEWPARLKIIKGIGKGLRYLYSELPSLITPHGHLKSSNVLLKANYEPLLSDYGLIPVVNQEHAHELMVAYKSPEYSQQGRITKKTDVWCFGLLILEILTGKFPANFLHQNKSGDEEDLASWVKTIPEKEWNSQVFDKEMGPTKSSEGEMLKLLRIAMACCESDFEKRLDLREVVEKIEEVKEKDGDEDFYSSYASEADIRSSRGLSDELNFTM 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26615629 26618028 + CcPI632755_06g016040.1 Cco06g1604 182204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1604 651 SUPERFAMILY L domain-like 31 221 - -
Cco06g1604 651 Pfam Protein tyrosine and serine/threonine kinase 347 615 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1604 651 Gene3D Phosphorylase Kinase; domain 1 310 418 - -
Cco06g1604 651 Gene3D Transferase(Phosphotransferase) domain 1 419 637 - -
Cco06g1604 651 FunFam Nuclear pore complex protein NUP107 32 193 - -
Cco06g1604 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 620 IPR046959 -
Cco06g1604 651 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515(InterPro)
Cco06g1604 651 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Cco06g1604 651 FunFam pollen receptor-like kinase 1 312 418 - -
Cco06g1604 651 SUPERFAMILY Protein kinase-like (PK-like) 347 616 IPR011009 -
Cco06g1604 651 Gene3D Ribonuclease Inhibitor 148 242 IPR032675 -
Cco06g1604 651 FunFam Pollen receptor-like kinase 1 419 629 - -
Cco06g1604 651 MobiDBLite consensus disorder prediction 307 321 - -
Cco06g1604 651 Gene3D Ribonuclease Inhibitor 34 147 IPR032675 -
Cco06g1604 651 MobiDBLite consensus disorder prediction 279 325 - -
Cco06g1604 651 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2904 Cco-Chr5:36575491 Cco06g1604 Cco-Chr6:26615629 1.40E-145 dispersed
Cco06g1604 Cco-Chr6:26615629 Cco08g1412 Cco-Chr8:26049743 1.10E-131 dispersed
Cco10g0886 Cco-Chr10:18552950 Cco06g1604 Cco-Chr6:26615629 3.50E-87 transposed
Cco11g0157 Cco-Chr11:1661938 Cco06g1604 Cco-Chr6:26615629 4.60E-106 transposed
Cco01g1639 Cco-Chr1:29132530 Cco06g1604 Cco-Chr6:26615629 4.60E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86937 PF07714 PK_Tyr_Ser-Thr 2.30E-30 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1604 K28077 - csv:101213261 1103.2