Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g1606 | ATGGAAAATGTGTGCATCGCTCTCTTCATTCTCTTAGTTTCATTTTTCTCATTTGCCCTTTTCATCCTCTTCTATCGTCACAAGGCTCAATTCGCCTACCCCAACATTCCCCCGGGCAGCATCGGTTACCCGATCGTAGGGGAGACTCTACAAATGGTTGCCCACGAGAGGAACGGGCAGCCGGAGAATTTTATCTTTGAGCGCGCCGCCAAGTACAAGACGGAGATTTTCACGACTTCCGTCCTCGGGGAGCCGACCGCCGCCTTCTGCTCCGCCGCGGGGAATAAGCTTCTGTTCTCGAACGAGCAGAAATTAGTGACTCCGTGGTGGCCGAAATCTGCTGATAAAGTGTTTCCTTCTACCGTTAAGTATAATACGAATGAAGAAGCAAAGAGAACCAAGAACTTACTCCCTCAATTCATAAAGCCAGAAGCGCTTCGGCGATTTGTTGGAGTGATGGACTCTATTGCTCAAAAGCACTTCGCTTCCATGTGGGAAAATAAGAAAGAAATCATCGTCGTTTCCACTCTAAAAGATTATACGTTCTCCCTTGCATGTCGGTTGTTCATGAGCCTGGAGGATGTAAACGAGGTGCAAAGAATCTTCAAGAGGTTTGAAGAGATAGCGTCGGGGATTATATCGGTACCGATAGATTTTCCGGGAACAATGTTCAGGAAAGCCATAAAAGCATCGGAGTTTGTGAGGAAGGAGCTGTTGGGGATCATAAGGCAGCGAAAAACAGATCTAGGCGAAGGGAAGGCATCAGCGACGCAAGACATTCTATCACACATGCTTTTGGCCACTGACAGCAATGGCCAATTCATTCATGAAGAAGATATTGCCGCTAAAATTCTTGGTCTACTCGTCGGTGGACACGATACCGGCATCTGTACTTGCACTTTCGTTGTCAAGTACTTGGCTGCTCTTCCCCACGTCTACGAAAATGTCTACAATGAGCAAATGGAGATAGCAAGATCAAAGACAGCAGGTGAACTATTGACTTGGGAAGATCTTCAGAAGATGAAGTATTCATGGAATGTAGTTTGTGAAGTGCTTAGACTCTTCCCTCCAGTTCAAGGAGCTTTCAGGGTTGCCCTCACTGACTTTGTCTTTAATGGCTTCTATATCCCCAAGGGCTGGAAGTTGTATTGGAGTGCGGCAGCAACACACAAAAACGCAGAGTACTTTGCGGAGCCATTAAAGTTCGAGCCAAAGAGGTTCGAAGGGAAAGGTCCGGCTCCGTTCACGTACGTGCCGTTCGGGGGTGGTCCAAGAATGTGCCCCGGCAAAGAGTACGCGAGGCTCGAGGTCCTTGTTTTCATCCACCATTTGATCAAGCGTTTCAGACTCCAACTTTGCCTTCCCCATGAAGAGGTCACCGCCAATCCAATTCCCACTCCCCTCCACGGCCTTCCGGTTCGTCTCTTTCCCCACGCGCCGCCGCCCCATTATTCTTCGTCCCCCTAA | 1467 | 48.67 | MENVCIALFILLVSFFSFALFILFYRHKAQFAYPNIPPGSIGYPIVGETLQMVAHERNGQPENFIFERAAKYKTEIFTTSVLGEPTAAFCSAAGNKLLFSNEQKLVTPWWPKSADKVFPSTVKYNTNEEAKRTKNLLPQFIKPEALRRFVGVMDSIAQKHFASMWENKKEIIVVSTLKDYTFSLACRLFMSLEDVNEVQRIFKRFEEIASGIISVPIDFPGTMFRKAIKASEFVRKELLGIIRQRKTDLGEGKASATQDILSHMLLATDSNGQFIHEEDIAAKILGLLVGGHDTGICTCTFVVKYLAALPHVYENVYNEQMEIARSKTAGELLTWEDLQKMKYSWNVVCEVLRLFPPVQGAFRVALTDFVFNGFYIPKGWKLYWSAAATHKNAEYFAEPLKFEPKRFEGKGPAPFTYVPFGGGPRMCPGKEYARLEVLVFIHHLIKRFRLQLCLPHEEVTANPIPTPLHGLPVRLFPHAPPPHYSSSP | 488 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 26629366 | 26634386 | + | CcPI632755_06g016060.1 | Cco06g1606 | 182206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g1606 | 488 | Pfam | Cytochrome P450 | 37 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | PRINTS | E-class P450 group I signature | 417 | 427 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | PRINTS | E-class P450 group I signature | 385 | 409 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | PRINTS | E-class P450 group I signature | 279 | 296 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | PRINTS | E-class P450 group I signature | 427 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | PRINTS | P450 superfamily signature | 346 | 357 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | PRINTS | P450 superfamily signature | 427 | 438 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | PRINTS | P450 superfamily signature | 290 | 307 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | PRINTS | P450 superfamily signature | 418 | 427 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | PANTHER | CYTOCHROME P450 26 | 35 | 455 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Cco06g1606 | 488 | SUPERFAMILY | Cytochrome P450 | 31 | 477 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g1606 | 488 | FunFam | Taxadiene 5-alpha hydroxylase | 27 | 478 | - | - | |
| Cco06g1606 | 488 | CDD | CYP90-like | 68 | 477 | - | - | |
| Cco06g1606 | 488 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 420 | 429 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco06g1606 | 488 | Gene3D | Cytochrome P450 | 26 | 477 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g1203 | Cco-Chr3:23569078 | Cco06g1606 | Cco-Chr6:26629366 | 2.30E-187 | dispersed | |
| Cco05g1641 | Cco-Chr5:22533115 | Cco06g1606 | Cco-Chr6:26629366 | 7.20E-93 | dispersed | |
| Cco06g1606 | Cco-Chr6:26629366 | Cco09g2432 | Cco-Chr9:38544503 | 1.40E-72 | dispersed | |
| Cco06g1606 | Cco-Chr6:26629366 | Cco08g1779 | Cco-Chr8:28899018 | 2.40E-64 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g1606 | K20667 | - | rcu:8282886 | 661.373 |