Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1620 ATGGCAGCTCCAAAGTTCTTGCAGTTCGGCACTTCAATCTCCCGAACTACACCCAGAGCTCTATCGCCCCTCCTCTTCCCCAGAAGACTCCCGCCAAAGCTCATATCCTTCATCAGGTGCAGTTCTTCTACCGCGCTTGATGCCGCCGGCAGCAGCGGCGCTGATGCTCCCCAACAACACTCCACCCTCACTCACCACCCATGGCCTGAATGGGTTTCCTTCGTCGACGGCCTGAGGACCAAGGGTTACTTGATCGAACCTCCTTCAGAAAATGCAACTACGCCATCTGGGACTGATTACAGCGACATGAACGTGTTGAAGGATGCTTGCGTCAGCTTTGCGCGCGATCGATACGATATTTTCAAGTCATTGTCGACAGATGATATTCAAACGATTGTGAAGGATGGATGCCCCAATCTCTTCCGGAAAGTTGTTAATTCAGCTAAAAGGTTGAGGGCTTATGTGCAACTAGATGAAGGGGACGTTTGTAGTACCTGCAACCTTCGAGGCTCCTGTGATAGAGCTTATGTTATTTTAAAGGAAACAGAAGCAACTGCAAGAACTGTGGATATAGCTCGATTATTGTTGACCTATGCATTGGATCCCCTTGTTTTGTCTGGAGGGAACAAACCTTCGGGTAGAGAGCATGTCGAAGTCTCTGTGAGGAAATTACTTTCCGAGCTGTTGGAACTGAGTGAAAAACCCCTTGATGCAGCAGCAATGAAGAAGGATACAAAATCTCCCCAAAGAAAAGAAAAACTATCAAAATTTACAAATGGTGCCTCAACTCAAGATGTTGAGATGAAGAGAGGAGATTGGATGTGTATGAAATGCAACTTTTTGAATTTTGCTAGAAACATAAGATGTTTAAAATGTAACGAAGATGGTCCTAAAAGAGTTCGTTCAAATGATATTGAAATGAAGAACGGAGATTGGATCTGTCCAGAATGCAACTTTATGAACTTCTCAAAAAATATTCGCTGCTTAAAGTGCAAAACAGAGGGGCCGAGGAAGATTAATGACAAAGAAATCGAAATGAAGAAGGGAGATTGGATCTGCCCGCAATGTACATTCATGAACTTTGCCAATAACATGAAATGTTTGCGTTGCCGAGAACATCGTCCGAGGAGAGATATGAATCCAGGAGAATGGGAATGTCCTTCGTGTGGTTTTTTGAATTACAGAGGGAACATGAGCTGCCGCAAGTGCAATGTTGAGCGTCCTAAACAAGAAATAAGTGCCGAGTACACGGAGCAACTATGGAAGTCACCCAGGGAAAGATGA 1284 44.78 MAAPKFLQFGTSISRTTPRALSPLLFPRRLPPKLISFIRCSSSTALDAAGSSGADAPQQHSTLTHHPWPEWVSFVDGLRTKGYLIEPPSENATTPSGTDYSDMNVLKDACVSFARDRYDIFKSLSTDDIQTIVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCDRAYVILKETEATARTVDIARLLLTYALDPLVLSGGNKPSGREHVEVSVRKLLSELLELSEKPLDAAAMKKDTKSPQRKEKLSKFTNGASTQDVEMKRGDWMCMKCNFLNFARNIRCLKCNEDGPKRVRSNDIEMKNGDWICPECNFMNFSKNIRCLKCKTEGPRKINDKEIEMKKGDWICPQCTFMNFANNMKCLRCREHRPRRDMNPGEWECPSCGFLNYRGNMSCRKCNVERPKQEISAEYTEQLWKSPRER 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26808915 26812933 - CcPI632755_06g016200.1 Cco06g1620 182220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1620 427 PANTHER ZINC FINGER PROTEIN 296 336 - GO:0003729(PANTHER)|GO:0005737(PANTHER)
Cco06g1620 427 SUPERFAMILY Ran binding protein zinc finger-like 301 336 IPR036443 -
Cco06g1620 427 ProSitePatterns Zinc finger RanBP2-type signature. 351 370 IPR001876 -
Cco06g1620 427 ProSitePatterns Zinc finger RanBP2-type signature. 384 403 IPR001876 -
Cco06g1620 427 SUPERFAMILY Ran binding protein zinc finger-like 261 297 IPR036443 -
Cco06g1620 427 ProSiteProfiles Zinc finger RanBP2 type profile. 308 337 IPR001876 -
Cco06g1620 427 SMART zf_4 271 295 IPR001876 -
Cco06g1620 427 SMART zf_4 382 406 IPR001876 -
Cco06g1620 427 SMART zf_4 310 334 IPR001876 -
Cco06g1620 427 SMART zf_4 349 373 IPR001876 -
Cco06g1620 427 ProSiteProfiles Zinc finger RanBP2 type profile. 380 409 IPR001876 -
Cco06g1620 427 ProSiteProfiles Zinc finger RanBP2 type profile. 347 376 IPR001876 -
Cco06g1620 427 ProSiteProfiles Zinc finger RanBP2 type profile. 269 298 IPR001876 -
Cco06g1620 427 Pfam Zn-finger in Ran binding protein and others 308 336 IPR001876 -
Cco06g1620 427 Pfam Zn-finger in Ran binding protein and others 347 370 IPR001876 -
Cco06g1620 427 Gene3D - 300 338 - -
Cco06g1620 427 Gene3D - 377 411 - -
Cco06g1620 427 Gene3D - 260 299 - -
Cco06g1620 427 Gene3D - 339 376 - -
Cco06g1620 427 SUPERFAMILY Ran binding protein zinc finger-like 339 376 IPR036443 -
Cco06g1620 427 SUPERFAMILY Ran binding protein zinc finger-like 378 410 IPR036443 -
Cco06g1620 427 MobiDBLite consensus disorder prediction 239 258 - -
Cco06g1620 427 MobiDBLite consensus disorder prediction 239 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1620 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0681 Cco-Chr1:7089377 Cco06g1620 Cco-Chr6:26808915 1.80E-44 dispersed
Cco02g1683 Cco-Chr2:29465605 Cco06g1620 Cco-Chr6:26808915 4.80E-44 dispersed
Cco06g1620 Cco-Chr6:26808915 Cco10g1685 Cco-Chr10:30328657 2.80E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37