Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1624 ATGCCGGATACACCAACATCGCCGAAGAGCGGTGGCCGTCTGGTGCTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGCATCATTCGTGGTGTCAATCTTGCTGTTCGTGATGTTCGCAGTAGTGATCCTTATGTTGTCGTCAAGATGGGAAAGCAAAAACTGAAGACAAGGGTGATAAAGAAGGATGTTAATCCTATATGGAATGAAGATCTAACTCTTTCTGTCAGTGATCCGAATCTTCCAATTAAGCTGACCGTTTACGATCACGACACATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTCGATATCAAAGCATTTATGGAAGCACTGAAGATGAACTTGAAAAATCTTCCCAGTGGAACTACAATCTCACGAATGCTACCGGCCAGGCAAAACTGTCTCGCTGAAGAGAGCTGTGTCGTCTGGAAAGATGGTAAAGTAGTCCAAGATATCTACCTTAGACTGAAAAATGTCGAATGCGGAGAAGTCGAAATTCAGTTGCAGTGGATTGATCTTCCGAACCCCAAAGGCTGA 543 44.01 MPDTPTSPKSGGRLVLMENLLGLLRIRIIRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPIWNEDLTLSVSDPNLPIKLTVYDHDTFSKDDKMGYAEFDIKAFMEALKMNLKNLPSGTTISRMLPARQNCLAEESCVVWKDGKVVQDIYLRLKNVECGEVEIQLQWIDLPNPKG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26838525 26840810 + CcPI632755_06g016240.1 Cco06g1624 182224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1624 180 SMART C2_3c 23 118 IPR000008 -
Cco06g1624 180 CDD C2_ArfGAP 21 164 - -
Cco06g1624 180 Gene3D C2 domain 18 179 IPR035892 -
Cco06g1624 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 22 166 IPR035892 -
Cco06g1624 180 Pfam C2 domain 22 109 IPR000008 -
Cco06g1624 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 17 178 IPR044562 -
Cco06g1624 180 ProSiteProfiles C2 domain profile. 8 119 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1211 Cco-Chr1:18301180 Cco06g1624 Cco-Chr6:26838525 2.10E-33 dispersed
Cco03g0822 Cco-Chr3:8999068 Cco06g1624 Cco-Chr6:26838525 1.40E-34 dispersed
Cco04g1906 Cco-Chr4:33551504 Cco06g1624 Cco-Chr6:26838525 1.10E-32 dispersed
Cco06g1624 Cco-Chr6:26838525 Cco08g1602 Cco-Chr8:27562163 7.50E-11 dispersed
Cco01g0662 Cco-Chr1:6774740 Cco06g1624 Cco-Chr6:26838525 1.40E-34 transposed
Cco05g1287 Cco-Chr5:12906163 Cco06g1624 Cco-Chr6:26838525 3.00E-67 transposed
Cco07g0645 Cco-Chr7:10394361 Cco06g1624 Cco-Chr6:26838525 3.00E-49 transposed
Cco01g1650 Cco-Chr1:29240734 Cco06g1624 Cco-Chr6:26838525 1.50E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1624 - - - 0.0