Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1628 ATGTGGACGTTGGGTTACGATGAGAATGGCGGAGAATTTTGCTTCTCTGAGGCCTTTAATGGCGGTCGCAAGCTTCGACCTCTCGTCCCTCGCCCTTTGCCTTCCCTTCATGCCAATGGCGCTAACTTCTCTTCTCAATATTACCATCTTGGTAATCATTTGAATGAGGATAACAAGAGAGGGTTCTTGAATAATGGAAAGAGTTGGTCGGGTCCAACACCAGTAGTAGTGAGCTCATCAAGATGGAATCCAACGGCGGAGCAGTTGAGAATTCTGGAGGAGCTATATCGGCGAGGGACACGAACGCCGTCCGCCGACCAAATCCAACACATCACTGCCCAGCTCCGCCGCTACGGCAAAATAGAAGGCAAAAACGTTTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGCCGTCAAACGGCCGCTGAACAAACCAAATATTCTGAGGCAGAAAAAGGGTACGAAATTGAAGAGACAAAGACGAAGTGTAGGTGGGGAAGGGCAACACCTCCACCCTCTATAATCTCCTCTACTCTACTTTCAAAGGAATGGGCAGAAACACAGAGAAAAACAAAAGTAGTTGAATTGGAAGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAAAAGAGACATGGAATTACAATAACATATTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACAGTGTCATTGAATCCCACAACGGAGACCAACGACACAATGTCGTTGACAACAACAATGACGACGAGGAATCTAAAACGATGACACTTCAGTTGTTTCCACTCCGTAGCACAAAGTTTTACAAATACGACAGCGAGAGAGAGGGACGACGAGATGACCAACCGGAGATCACGTCGGATTCAGACATGATCAAAAGCTCCTCCTTGTCTCCAAATTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTAA 972 45.16 MWTLGYDENGGEFCFSEAFNGGRKLRPLVPRPLPSLHANGANFSSQYYHLGNHLNEDNKRGFLNNGKSWSGPTPVVVSSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSEAEKGYEIEETKTKCRWGRATPPPSIISSTLLSKEWAETQRKTKVVELEEEEETRRESVERKETWNYNNILNCQLINPTRKTQHLNSVIESHNGDQRHNVVDNNNDDEESKTMTLQLFPLRSTKFYKYDSEREGRRDDQPEITSDSDMIKSSSLSPNCSFQFFEFLPLKN 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26894662 26898596 - CcPI632755_06g016280.1 Cco06g1628 182228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1628 323 SMART HOX_1 77 144 IPR001356 GO:0003677(InterPro)
Cco06g1628 323 FunFam WUSCHEL-related homeobox 4 79 146 - -
Cco06g1628 323 MobiDBLite consensus disorder prediction 282 297 - -
Cco06g1628 323 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677(InterPro)
Cco06g1628 323 MobiDBLite consensus disorder prediction 282 306 - -
Cco06g1628 323 Pfam Homeodomain 80 139 IPR001356 GO:0003677(InterPro)
Cco06g1628 323 Gene3D - 79 148 - -
Cco06g1628 323 CDD homeodomain 81 141 IPR001356 GO:0003677(InterPro)
Cco06g1628 323 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 74 318 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Cco06g1628 323 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2212 Cco-Chr2:34722276 Cco06g1628 Cco-Chr6:26894662 9.10E-23 dispersed
Cco03g0168 Cco-Chr3:1645044 Cco06g1628 Cco-Chr6:26894662 4.90E-25 dispersed
Cco04g1792 Cco-Chr4:32790123 Cco06g1628 Cco-Chr6:26894662 2.90E-23 transposed
Cco08g1796 Cco-Chr8:29078436 Cco06g1628 Cco-Chr6:26894662 8.90E-25 transposed
Cco11g0642 Cco-Chr11:6979980 Cco06g1628 Cco-Chr6:26894662 2.80E-22 transposed
Cco01g1654 Cco-Chr1:29304673 Cco06g1628 Cco-Chr6:26894662 2.80E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59528 PF00046 Homeodomain 2.10E-19 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1628 - - - 0.0