Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1628 ATGTGGACGTTGGGTTACGATGAGAATGGCGGAGAATTTTGCTTCTCTGAGGCCTTTAATGGCGGTCGCAAGCTTCGACCTCTCGTCCCTCGCCCTTTGCCTTCCCTTCATGCCAATGGCGCTAACTTCTCTTCTCAATATTACCATCTTGGTAATCATTTGAATGAGGATAACAAGAGAGGGTTCTTGAATAATGGAAAGAGTTGGTCGGGTCCAACACCAGTAGTAGTGAGCTCATCAAGATGGAATCCAACGGCGGAGCAGTTGAGAATTCTGGAGGAGCTATATCGGCGAGGGACACGAACGCCGTCCGCCGACCAAATCCAACACATCACTGCCCAGCTCCGCCGCTACGGCAAAATAGAAGGCAAAAACGTTTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGCCGTCAAACGGCCGCTGAACAAACCAAATATTCTGAGGCAGAAAAAGGGTACGAAATTGAAGAGACAAAGACGAAGTGTAGGTGGGGAAGGGCAACACCTCCACCCTCTATAATCTCCTCTACTCTACTTTCAAAGGAATGGGCAGAAACACAGAGAAAAACAAAAGTAGTTGAATTGGAAGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAAAAGAGACATGGAATTACAATAACATATTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACAGTGTCATTGAATCCCACAACGGAGACCAACGACACAATGTCGTTGACAACAACAATGACGACGAGGAATCTAAAACGATGACACTTCAGTTGTTTCCACTCCGTAGCACAAAGTTTTACAAATACGACAGCGAGAGAGAGGGACGACGAGATGACCAACCGGAGATCACGTCGGATTCAGACATGATCAAAAGCTCCTCCTTGTCTCCAAATTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTAA 972 45.16 MWTLGYDENGGEFCFSEAFNGGRKLRPLVPRPLPSLHANGANFSSQYYHLGNHLNEDNKRGFLNNGKSWSGPTPVVVSSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSEAEKGYEIEETKTKCRWGRATPPPSIISSTLLSKEWAETQRKTKVVELEEEEETRRESVERKETWNYNNILNCQLINPTRKTQHLNSVIESHNGDQRHNVVDNNNDDEESKTMTLQLFPLRSTKFYKYDSEREGRRDDQPEITSDSDMIKSSSLSPNCSFQFFEFLPLKN 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26894662 26898596 - CcPI632755_06g016280.1 Cco06g1628 182228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1628 323 SMART HOX_1 77 144 IPR001356 GO:0003677(InterPro)
Cco06g1628 323 FunFam WUSCHEL-related homeobox 4 79 146 - -
Cco06g1628 323 MobiDBLite consensus disorder prediction 282 297 - -
Cco06g1628 323 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677(InterPro)
Cco06g1628 323 MobiDBLite consensus disorder prediction 282 306 - -
Cco06g1628 323 Pfam Homeodomain 80 139 IPR001356 GO:0003677(InterPro)
Cco06g1628 323 Gene3D - 79 148 - -
Cco06g1628 323 CDD homeodomain 81 141 IPR001356 GO:0003677(InterPro)
Cco06g1628 323 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 74 318 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Cco06g1628 323 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1628 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2212 Cco-Chr2:34722276 Cco06g1628 Cco-Chr6:26894662 9.10E-23 dispersed
Cco03g0168 Cco-Chr3:1645044 Cco06g1628 Cco-Chr6:26894662 4.90E-25 dispersed
Cco04g1792 Cco-Chr4:32790123 Cco06g1628 Cco-Chr6:26894662 2.90E-23 transposed
Cco08g1796 Cco-Chr8:29078436 Cco06g1628 Cco-Chr6:26894662 8.90E-25 transposed
Cco11g0642 Cco-Chr11:6979980 Cco06g1628 Cco-Chr6:26894662 2.80E-22 transposed
Cco01g1654 Cco-Chr1:29304673 Cco06g1628 Cco-Chr6:26894662 2.80E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g1654 . 1 195 Wox Gene Family AT3G18010 57.2 3.0e-48 189.5
Cco06g1628 . 1 176 Wox Gene Family AT3G18010 53.6 6.1e-41 165.2
Cco10g0030 . 1 276 Wox Gene Family AT4G35550 51.2 8.7e-72 267.3
Cco11g1932 . 1 271 Wox Gene Family AT4G35550 50.9 1.2e-57 220.3
Cco08g1796 . 5 162 Wox Gene Family AT1G46480 65.1 2.4e-52 202.2
Cco01g1654 . 1 195 Wox Gene Family AT3G18010 57.2 3.0e-48 189.5
Cco06g1628 . 1 176 Wox Gene Family AT3G18010 53.6 6.1e-41 165.2
Cco08g1796 . 5 162 Wox Gene Family AT1G46480 65.1 2.4e-52 202.2
Cco10g0030 . 1 276 Wox Gene Family AT4G35550 51.2 8.7e-72 267.3
Cco11g1932 . 1 271 Wox Gene Family AT4G35550 50.9 1.2e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014148 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59528 PF00046 Homeodomain 2.10E-19 CL0123 Cco TF