Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1633 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCTTCTTCTTCTTCTTCCACTTCTACTTCTAATTTTGGTTCTAGTTCTGATTCTTCTGATCCTAATCTCAATTACCCTAATCACCATAAGTTTGACTATGTTGATAATGGTGGTGTTAATGGTGACCAATTGTTGAGTAGCGATTTACGCGCCCAATCAACCATTACCCACAAACGCAAACCTCTAAGGAAACAACCCCAACTTGGAGGAGAAGGGATTCTTGAGCAATTACCTGAGGAGGAGGAGGACGATCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAACGGACAAGTCACTTCAGACATCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAATTTTTCACAGAGTATGGAGAGGCCAGCAGATATCAGGTGCAAGAAATAATCGGTAAAGGCAGCTATGGGGTTGTCGGTTCCGCCGTTGATACCCATACTGATGAGAAGGTTGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGGATTTTAAGAGAAATTAAACTCCTACGGCTGCTCCGTCATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAATGATGATCTCACTCCTGAGCATCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATTCATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATTTGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCACCATCTGCTATTTTCTGGACTGACTATGTTGCGACTCGGTGGTATCGTGCTCCTGAACTTTGTGGCTCTTTTTTCTCAAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGAAAACCGCTGTTTCCTGGGAAAAATGTGGTGCACCAACTGGATCTGATGACTGATGTGCTTGGCACACCTTCCGCTGAGTCAATTGCTAGGATTCGGAATGAAAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCCAATCCCTTGGCTCTCCGCTTGCTTCAGCGCCTGCTTGCATTTGATCCCAAAGATCGTCCCACTGCTGAAGAGGCATTAGCTGATCCGTATTTTCATGGTTTGGCTAACGTGGATCGGGAACCATCAACACAACCAATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTAACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTACAGGAATATCTCCGCAGTGGAGAACAAACAAGCTTCATGTACCCAAGTGGGGTTGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACATTATGGCAAGGGTGAAAGAAGTACTCCACTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGGTTTGTGCACCAAAAGATGAATCCGAACAGCACAATGATTTAGAAGGAAGAAATGTTGCTACATCTCTTCAAAGTCCCCCAAAGTCGCAAGGAGATGGTTCCGAAAACACAAACGGTAATGAACAAAATGGACCAAACAAGCCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGATGTTAAACCAAGAAAGGACCTAGAGGAGGAACCGATTACCGAGATGAATGACGAGGCAATTGACGGATTGTCTCATAAGGACATTTTGGCTACAAAGCAAAGTGTAGCGAAGTTTCTGAAGTCAGGGCCTTTTCAGGTTGTTACCCTCGTGTAG 1983 42.66 MGSGTLVDGVRRWFQRRTSSSSSSTSTSNFGSSSDSSDPNLNYPNHHKFDYVDNGGVNGDQLLSSDLRAQSTITHKRKPLRKQPQLGGEGILEQLPEEEEDDLDYSALKLIKVPKRTSHFRHPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAVDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVPLTQKFPNANPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCAPKDESEQHNDLEGRNVATSLQSPPKSQGDGSENTNGNEQNGPNKPNYSARSLLKSASISASKCIDVKPRKDLEEEPITEMNDEAIDGLSHKDILATKQSVAKFLKSGPFQVVTLV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26950374 26955996 + CcPI632755_06g016330.1 Cco06g1633 182233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1633 660 MobiDBLite consensus disorder prediction 557 594 - -
Cco06g1633 660 Gene3D Transferase(Phosphotransferase) domain 1 237 465 - -
Cco06g1633 660 FunFam Mitogen-activated protein kinase 237 465 - -
Cco06g1633 660 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 148 483 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco06g1633 660 Pfam Protein kinase domain 151 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1633 660 MobiDBLite consensus disorder prediction 15 49 - -
Cco06g1633 660 SMART serkin_6 151 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1633 660 SUPERFAMILY Protein kinase-like (PK-like) 147 447 IPR011009 -
Cco06g1633 660 ProSiteProfiles Protein kinase domain profile. 151 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1633 660 MobiDBLite consensus disorder prediction 521 594 - -
Cco06g1633 660 ProSitePatterns Protein kinases ATP-binding region signature. 157 181 IPR017441 GO:0005524(InterPro)
Cco06g1633 660 ProSitePatterns MAP kinase signature. 186 289 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1633 660 CDD STKc_TDY_MAPK 150 487 - -
Cco06g1633 660 MobiDBLite consensus disorder prediction 540 556 - -
Cco06g1633 660 Gene3D Phosphorylase Kinase; domain 1 167 488 - -
Cco06g1633 660 FunFam Mitogen-activated protein kinase 466 488 - -
Cco06g1633 660 MobiDBLite consensus disorder prediction 15 43 - -
Cco06g1633 660 FunFam Mitogen-activated protein kinase 140 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0584 Cco-Chr6:6267429 Cco06g1633 Cco-Chr6:26950374 6.80E-207 dispersed
Cco06g1633 Cco-Chr6:26950374 Cco09g2440 Cco-Chr9:38590643 7.30E-197 dispersed
Cco03g0995 Cco-Chr3:15005752 Cco06g1633 Cco-Chr6:26950374 4.90E-212 transposed
Cco07g0716 Cco-Chr7:13272636 Cco06g1633 Cco-Chr6:26950374 1.30E-206 transposed
Cco01g1658 Cco-Chr1:29351806 Cco06g1633 Cco-Chr6:26950374 3.00E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86939 PF00069 Pkinase 1.30E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1633 - - - 0.0