Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1635 ATGCAAATGGCTGGTGGTGATCAAGATATGGCAGTTCACTCTCTTGCATCTAAACTTTCTGTAGTTTCAGAACATGAACCTGAACAATGTGGTAATAATAGTAATAATGCCACTAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGCCGTGCCGCCTATCTCGGTGGCTGCGGAGAGTGATCAAGCTCTCCGTCGACCTCGGGGGCGGCCAGCCGGGTCCAAAAACAAGCCAAAACCACCCATTATTGTTACCCGAGATAGCGCAAATGCCCTCCGAGCTCATGCCATTGAGGTTAGCTCTGGCTGCGATGTCAATGAGAGCCTCTCCAACTTCGCTCGGAGAAAGCAGCGTGGTGTTTGCATTCTTAGCGGTAGCGGGTGTGTCACTAATGTCACGCTCCGCCAGGCTGCCTCCTCTGGCGCTATTGTCACTCTCCATGGCCGCTTTGAGATTCTTTCCATGCTGGGGTCGATCTTGCCACCACCGGCACCGTCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTCGGTGGTGTTGTTGTGGGCGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACATTCATGAACGCGACATTCGACCGCCTACCATCGGACGACGAAGAAGTGGCAGCCGCCATGCATAGTCAACATTACGGCCAAAATGGGAGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAGTGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGCAGAACCATGTCAAAGACTTAA 840 52.74 MQMAGGDQDMAVHSLASKLSVVSEHEPEQCGNNSNNATNNHQQRPCFDPSLVSPKAVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAAAMHSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWAAAGRTMSKT 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26963497 26964525 + CcPI632755_06g016350.1 Cco06g1635 182235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1635 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Cco06g1635 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 64 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco06g1635 279 CDD DUF296 99 181 IPR005175 -
Cco06g1635 279 MobiDBLite consensus disorder prediction 26 47 - -
Cco06g1635 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Cco06g1635 279 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Cco06g1635 279 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Cco06g1635 279 Gene3D - 98 234 - -
Cco06g1635 279 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0258 Cco-Chr5:2040441 Cco06g1635 Cco-Chr6:26963497 3.60E-57 dispersed
Cco06g1635 Cco-Chr6:26963497 Cco07g0348 Cco-Chr7:3666747 3.90E-59 dispersed
Cco06g1635 Cco-Chr6:26963497 Cco01g0360 Cco-Chr1:3573258 7.70E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1635 - - - 0.0