Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1639 ATGGGAAAGAAGCTGGACTCTGGATCATACCTTTATTCGTTGCAAGAGGTCAAAGGGCTTATGGAGTTTGATTGTCTCGACTGTGCTAAGATCTGTTTCTATTTATATTACCATTCAAGGTGTGCGCGTGGAGATGGCGTCATCGTTGTCGAGAGGGGAATTCAAACTATTCTGTATGGGTTACTGGTGATTTGGTCGGATAGGAATATGGTTAATATGGGAAATCTGATTGGGGAGATGATGAAGTGGTGGAGGAGATTAGGGAGTGGTTGGTTAGAGCTTGTATTGAGGATGTTAATTACATTATTTGGGATTGATGCTCGTAGTCTAGCTGGGTGGGCTTGTACTAATGCAAGGTGTGGAATTTGGACCTCTGTTATGCCCTTGTGGCTTCAGGCGATCCTCCATGACGAGACTTTGTTTCCTAGGGTTCTCCAAGTTACAACCGCCTATAGCCGGTCGTCTTCCCAAAACCCTAATTTTCTCGACTATATATACCTTCTCATCTTCCTCGCTTCCTCCTCTATCGCTCACAAATTTACAATCTTTTACACAGCCAAAGGCGTAGAACCAAAGCAGAGCTCAAAAATGGCGGAGGGGCTTGTTCTGCGAGGCACAATGAGGGCTCACACCGACATGGTGACGGCCATCGCCACTCCCATCGACAATTCCGATATGATTGTCACCTCTTCCCGTGACAAATCCATCATCTTGTGGCGTCTCACCAAGGAAGAGAAGACCTACGGCGTCCCTCAACGAAGGCTCAATGGTCACTCCCACTTTGTTCAAGATGTTGTCCTCTCATCCGACGGTCAGTTCGCCCTATCTGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGACCTTGCTACCGGCGTTACATCACGTCGATTCGTTGGACATTCGAAAGATGTTCTCTCTGTCGCCTTCTCCATCGACAATCGTCAGATCGTCTCGGCCTCTCGTGACCGAACAATCAAGCTATGGAACACTCTCGGTGAGTGCAAGTACACAATCCAGGACGGTGATGCTCACTCTGACTGGGTTAGTTGTGTTAGATTTAGCCCTAACACGCTCCAGCCAACTATTGTTTCGGCGTCATGGGACAAGACCGTGAAGGTCTGGAACTTGACCAATTGCAAGTTGAGAGTTACTCTCGCTGGTCACGCTGGTTATGTCAACACAGTGGCTGTTTCGCCGGATGGGTCTCTGTGCGCTAGCGGAGGCAAAGACGGAGTGATTTTGCTGTGGGATTTGGCTGAGGGTAAGAGGCTCTACTCCTTGGATGCCGGATCAATTATTCATGCTCTTTGTTTCAGCCCCAACAGGTACTGGCTCTGTGCTGCAACTGAGAGCAGTATTAAGATCTGGGATTTGGAGAGCAAAAGTATTGTGGAAGACTTGAAAGTCGATTTAAAAACCGAGGCGGAGAAAACTGATGACACCCATGCTGCTACTGCCAACAAGATTAAGGTTATTTACTGCACAAGTTTGAGCTGGAGCGCAGATGGGAGCACATTGTTTGGTGGCTACACAGATGGAGTCGTCAGAGTTTGGGGAATTGGTCGTTACTAG 1572 48.54 MGKKLDSGSYLYSLQEVKGLMEFDCLDCAKICFYLYYHSRCARGDGVIVVERGIQTILYGLLVIWSDRNMVNMGNLIGEMMKWWRRLGSGWLELVLRMLITLFGIDARSLAGWACTNARCGIWTSVMPLWLQAILHDETLFPRVLQVTTAYSRSSSQNPNFLDYIYLLIFLASSSIAHKFTIFYTAKGVEPKQSSKMAEGLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIILWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLTNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKVIYCTSLSWSADGSTLFGGYTDGVVRVWGIGRY 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27002697 27005446 - CcPI632755_06g016390.1 Cco06g1639 182239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1639 523 ProSitePatterns Trp-Asp (WD) repeats signature. 362 376 IPR019775 -
Cco06g1639 523 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 296 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 523 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 CDD WD40 203 518 - -
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 291 - -
Cco06g1639 523 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 193 520 IPR045223 GO:0001934(PANTHER)|GO:0005080(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0043022(PANTHER)|GO:0043022(InterPro)|GO:0045182(InterPro)|GO:0072344(PANTHER)
Cco06g1639 523 SMART WD40_4 248 287 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 SMART WD40_4 420 457 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 SMART WD40_4 331 375 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 SMART WD40_4 485 519 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 SMART WD40_4 200 240 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 SMART WD40_4 290 329 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 SMART WD40_4 378 417 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 FunFam Receptor for activated C kinase 1 204 523 - -
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 384 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 Pfam WD domain, G-beta repeat 494 518 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 Pfam WD domain, G-beta repeat 333 375 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 Pfam WD domain, G-beta repeat 422 457 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 Pfam WD domain, G-beta repeat 204 239 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 Pfam WD domain, G-beta repeat 294 329 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 Pfam WD domain, G-beta repeat 380 417 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 Pfam WD domain, G-beta repeat 250 287 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 Gene3D - 200 523 IPR015943 GO:0005515(InterPro)
Cco06g1639 523 SUPERFAMILY WD40 repeat-like 202 520 IPR036322 GO:0005515(InterPro)
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 378 - -
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 426 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 422 - -
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 329 - -
Cco06g1639 523 ProSitePatterns Trp-Asp (WD) repeats signature. 404 418 IPR019775 -
Cco06g1639 523 PRINTS G protein beta WD-40 repeat signature 362 376 IPR020472 -
Cco06g1639 523 PRINTS G protein beta WD-40 repeat signature 404 418 IPR020472 -
Cco06g1639 523 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 241 - -
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 329 IPR001680 GO:0005515(InterPro)
Cco06g1639 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 249 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1639 K14753 - - csv:101216713 663.685
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005819 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 39