Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1642 ATGCAAAGATTACCAACAATGGCAGAGGCAAAGATAATTGGGTCAGCTTCAAGCCTATTCTGCATAAGGGTTGAATGGGCCTTGAAGCTCAAAGGAATTGAGTACGAGTACATACCTGAAGACTTGAGAAACAAAAGTGAGTTGCTTCTCAAGTCCAACCCTGTGCTCAAGAAAATACCTGTGCTTTTGCACAATGACAAAGCCATCTCTGAGTCGCTTCTCATTATCGAATACATCGACGAGACGTGGAAGGAGAACCCAATATTGCCTGGAGATCCGTATGACAGAGCCAATGCTCGCTTCTGGGCTAAGTTTTTAGATGAGAAGGGCGTGTTCGGTGCGTGGGAAGCTTGCCGGGCTGAAGGAGAAGAGAAGGAGAAGGCTGTGGAGGCTGCAGTACAAAATTTGGGACTGCTTGACAAAGAAATCCAAGGAAAGAAATTCTTTGGAGGAGAGCAAATTGGTTATCTAGATTTAGCTGCAGGTTGGATCTGCCACTGGCTCAATGTTCTGGATGAAGTGGGAGAAATGAATGTGTTTGACAAAGAGAGGGTCCCATCCCTGCATGAATGGGCTCAAAACTTCATCCAGATTCCAGTTATCAAAGAATCCCTTCCACCCAGAGAAAATCTTGTCAACTACTTCAAGGGGAGTCTGAGCTACGTCCGGTCCTTAGCTGCAAAAAAGTAA 690 45.51 MQRLPTMAEAKIIGSASSLFCIRVEWALKLKGIEYEYIPEDLRNKSELLLKSNPVLKKIPVLLHNDKAISESLLIIEYIDETWKENPILPGDPYDRANARFWAKFLDEKGVFGAWEACRAEGEEKEKAVEAAVQNLGLLDKEIQGKKFFGGEQIGYLDLAAGWICHWLNVLDEVGEMNVFDKERVPSLHEWAQNFIQIPVIKESLPPRENLVNYFKGSLSYVRSLAAKK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27029622 27030916 - CcPI632755_06g016420.1 Cco06g1642 182242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1642 229 Gene3D Glutaredoxin 6 91 - -
Cco06g1642 229 Pfam Glutathione S-transferase, C-terminal domain 124 192 - -
Cco06g1642 229 FunFam Tau class glutathione S-transferase 89 225 - -
Cco06g1642 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 8 87 IPR004045 -
Cco06g1642 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 215 IPR010987 -
Cco06g1642 229 SUPERFAMILY GST C-terminal domain-like 81 217 IPR036282 -
Cco06g1642 229 SFLD Glutathione Transferase (cytosolic) 7 221 IPR040079 -
Cco06g1642 229 SFLD Main.3: Omega- and Tau-like 7 221 IPR045073 -
Cco06g1642 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 216 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco06g1642 229 CDD GST_C_Tau 93 217 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cco06g1642 229 Gene3D - 92 223 - -
Cco06g1642 229 Pfam Glutathione S-transferase, N-terminal domain 19 81 IPR004045 -
Cco06g1642 229 SUPERFAMILY Thioredoxin-like 12 108 IPR036249 -
Cco06g1642 229 FunFam Tau class glutathione S-transferase 6 90 - -
Cco06g1642 229 CDD GST_N_Tau 11 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1642 K00799 - - csv:101217418 414.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0297 Cco-Chr5:2362607 Cco06g1642 Cco-Chr6:27029622 6.50E-57 dispersed
Cco05g0427 Cco-Chr5:3502359 Cco06g1642 Cco-Chr6:27029622 3.40E-53 dispersed
Cco05g0429 Cco-Chr5:3505581 Cco06g1642 Cco-Chr6:27029622 4.00E-46 dispersed
Cco06g1642 Cco-Chr6:27029622 Cco07g1134 Cco-Chr7:25030187 6.80E-41 dispersed
Cco06g1642 Cco-Chr6:27029622 Cco05g2702 Cco-Chr5:34922965 5.60E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g252 . . . . . . . . . . . Cma11g00299 . . Sed08g0385 . . Bhi02g00117 Tan09g1846 Cmetu02g0734 . Hepe09g0371 . . Cla06g01435 Cam06g1590 Cec06g1650 Cco06g1642 Clacu06g1551 Cmu06g1506 Cre06g2315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01302 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25