Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1643 ATGACTGAGCTCGATCCATCAAAGAAAGTGGCCGATAGATATTTAAAGCGTGAGGTTCTCGGAGAGGGTACCTATGGTGTTGTATACAAAGCCATTGATACTCAGACAGGCCAGACGGTTGCAATTAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTCAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCACAAAGGAAATTTGCATCTTGTATTTGAATTTATGGAGACAGACCTTGAAGCTGTTATACGCGATCGAAACATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACTTTGAAAGGCCTTGCTTATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCAAATGGTCAACTGAAACTTGCAGATTTTGGTTTAGCTCGGATATTTGGGAGTCCAGATCGTAGATTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCTGAGTTATTGTTTGGCACTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCGGAACTACTACTTCGTCGTCCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATTTTTGCAGCATTTGGAACTCCTACGCCTTCACAATGGCCTGATATGTTATACCTACCTGATTACGTTGAGTTCCAATATGTTCCTGCACCTCCTCTACGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCATATGATCCAAAATCTAGAATTACCATTCAACAAGCATTGGAGCATAGGTACTTCTCATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGTGAACCTACGAACTCTCGAGTTTTGGACTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCCAGAAAGTCGAGAAGAGTAATGCCAGAGCGTGAGGCTTTTGAAGGAAATGCACATCGAGCTGATAGGCTTGATGACCATGTTAATGAGGTGCGAGAGGTAGCTGCTGGAAATTCAAGCAAGAATGAAGTAGTGCCTATGTCGTTGGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAGTAA 1251 41.25 MTELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRITIQQALEHRYFSSAPLPTDPSKLPRPTSKREPTNSRVLDLNSNEGPTVLSPPRKSRRVMPEREAFEGNAHRADRLDDHVNEVREVAAGNSSKNEVVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27032917 27037104 + CcPI632755_06g016430.1 Cco06g1643 182243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1643 416 MobiDBLite consensus disorder prediction 310 332 - -
Cco06g1643 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Cco06g1643 416 PANTHER CELL DIVISION PROTEIN KINASE 14 294 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
Cco06g1643 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1643 416 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Cco06g1643 416 FunFam Cyclin-dependent kinase D-1 5 94 - -
Cco06g1643 416 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Cco06g1643 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1643 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524(InterPro)
Cco06g1643 416 MobiDBLite consensus disorder prediction 401 416 - -
Cco06g1643 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1643 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro)
Cco06g1643 416 MobiDBLite consensus disorder prediction 296 341 - -
Cco06g1643 416 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Cco06g1643 416 MobiDBLite consensus disorder prediction 388 416 - -
Cco06g1643 416 SMART serkin_6 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1643 Cco-Chr6:27032917 Cco08g1903 Cco-Chr8:30030380 4.50E-67 dispersed
Cco10g1249 Cco-Chr10:25266009 Cco06g1643 Cco-Chr6:27032917 3.90E-12 dispersed
Cco06g1643 Cco-Chr6:27032917 Cco11g1440 Cco-Chr11:27176003 2.80E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86940 PF00069 Pkinase 1.70E-72 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1643 K02202 - csv:101217645 818.92