Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1648 ATGACCGATAGCGCTAAATCAATTCTCGAAGAGGAGACTTCGAAGCTCGAAACCAAGTCCAAGCGCGGCTCAGATGTCGAAGATGCTGATGTTACTGTGAAGAAGTTTAAAACGGAAGCTTCTGCCAATGAAACTGGACTCTGTACCGCTAGAAACTTGGAAGCTGTTAATGGTGACGAAGAACTTAAGGTCATCAGGAGGGGACTCGAGTTTGAAATTGAAGCGGATGCGGCCGAGGATAAAGGGTCTAGGCATACAATGGAAGATGCCTGGGTTTTGCTCTTGGATGGCAGCTTGGATTTTCCTGGGAAATTGAGATGTGCACATTTTGCTATCTATGATGGACACGGGGGTCGGTTAGCTGCCGAGCACGCTCAAAAGCATTTGCACAAGAATGTTCTCTCGGCCGGGTTACCACGTGAGTTGTTGGATGTAAAAGCAACTAAAAAGGCCATACTTGATGGGTTCCGGAAAACAGACGAGTCTCTTCTTCAAGAAAGTTCCGCAGGGGGATGGCAGGATGGTGCTACTGCTGTTTGCGTTTGGGTCTTAGGTCAAACAGTTTTTGTTGCTAATGTTGGTGATGCTAAAGCAGTTGTAGCCCGATCTTTGACTACTGATAAATCGACGAATAATCCTAATGGTGGAAGCTCTTTAAAGGCTATCGTTTTGACAAGGGAACATAAGGCAATCTACCCACAGGAGAGAGCTCGCATTCAAAAGGCTGGTGGCGTTGTTGGTTCAAACGGTCGATTGCAGGGTCGTCTTGAAGTTTCTCGGGCATTCGGAGATCGCCAATTTAAAAAGTTGGGCGTTATCGCAACTCCAGACATTCATTCTTTTGAATTGACTGATAGGGAGCATTTTATCATTCTCGGATGCGATGGACTTTGGGGGGTTTTTGGACCAAGTGATGCCGTTGATTTTGTCCAGAAATTATTGAAGGATGGCCTGCCCATAGCATCAATAAGTCGACGTCTCGTGAGGGAAGCAATTCGTGAACGGCGCTGCAAAGATAACTGTACCGCAATTGTCATTGTCTTCAGGCCCAAATGA 1056 46.4 MTDSAKSILEEETSKLETKSKRGSDVEDADVTVKKFKTEASANETGLCTARNLEAVNGDEELKVIRRGLEFEIEADAAEDKGSRHTMEDAWVLLLDGSLDFPGKLRCAHFAIYDGHGGRLAAEHAQKHLHKNVLSAGLPRELLDVKATKKAILDGFRKTDESLLQESSAGGWQDGATAVCVWVLGQTVFVANVGDAKAVVARSLTTDKSTNNPNGGSSLKAIVLTREHKAIYPQERARIQKAGGVVGSNGRLQGRLEVSRAFGDRQFKKLGVIATPDIHSFELTDREHFIILGCDGLWGVFGPSDAVDFVQKLLKDGLPIASISRRLVREAIRERRCKDNCTAIVIVFRPK 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27079369 27086831 + CcPI632755_06g016480.1 Cco06g1648 182248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1648 351 FunFam Probable protein phosphatase 2C 67 62 350 - -
Cco06g1648 351 SUPERFAMILY PP2C-like 72 349 IPR036457 -
Cco06g1648 351 Pfam Protein phosphatase 2C 79 336 IPR001932 -
Cco06g1648 351 PANTHER PROTEIN PHOSPHATASE 2C 53 348 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco06g1648 351 CDD PP2Cc 78 348 IPR001932 -
Cco06g1648 351 SMART PP2C_4 70 346 IPR001932 -
Cco06g1648 351 MobiDBLite consensus disorder prediction 1 28 - -
Cco06g1648 351 Gene3D - 59 349 IPR036457 -
Cco06g1648 351 ProSiteProfiles PPM-type phosphatase domain profile. 74 348 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1648 Cco-Chr6:27079369 Cco11g1461 Cco-Chr11:27421448 5.20E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1648 K17500 - csv:101216467 638.262