Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1649 ATGGCAAAGGGAAATCTTGTCTCTGAGAAAATAAAGCTTCTTCTTGGATTGATTGCTTTGCAGTTGTGTTATGCAGGATTTCACATTGTGTCAAGAGTTGCTTTAAACATTGGTGTTAGCAAAGTTGTTTATCCGGTGTATCGAAACGCGATAGCCTTAGCTCTGTTGAGTCCTTTTGCTTATTTTCTCGAGAAGAATGAAAGGCCACCTCTTACTTTCTCTTTGCTGTTTCAGTTCTTCCTTCTAGCTTTATTGGGAATTACTGCCAATCAAGGATTCTATCTCTTGGGGCTAAACTATGCATCTCCAACATTTGCTTCTGCAATGCAAAACTCAGTGCCTGCTATTACCTTTGTAATGGCTTGTGTTCTGAGACTTGAGCAAGTCAACTTCAGAAGAAGTGATGGTTTGGCAAAGATTTTGGGAACCATTGGGAGTGTTGGTGGTGCAACTGTGATCACTCTCTATAGAGGCCCTCCACTTCTCCACAACAACTACCTAACTCAAGGAAGTAGCATCTTAGAGATGGATGACCCAACAATTAAAGTGCAAAATTGGAGATGGGGTTGTATTTACCTGCTAGGCCACTGCCTTTCTTGGGCTGGTTGGATGGTTTTTCAGGCTTCTCTATTGAAAAAGTATCCAGCAAAACTAACAATAACTTCATACACATGCTTCTTTGGACTGATCCAATTCCTAGTCATAGCTGGCTTTGTGGAAACAGATTATCAGTACTGGAAAATCCAATCTGCTGAAGAACTCTTCACAATCTTATATGCTGGTGTTGTAGCTTCTGGCATTGTCTTCTCTCTCCAAACATGGTGCATCCACAAGAGTGATCCTGTTTTTGTTGCTGTCTTCCAGCCTCTCCAAACTTTCCTAGTAGCCATCATGGCGTTTCTCATCCTCGGCGATCGGTTATTCTCCGGCGGGGTTATTGGTGCTGTTCTTATAACACTTGGGCTTTACTCAGTTCTGTGGGGAAAAAGTAAAGAAAAGGCATTGGAAGAAGAAGAAGATAAGTGTTTAAAACATCCCCTTTTGGATGCTCAAAAAGGAGACAAAGAAGACAATGTTGTTTCAGACATACCATGA 1095 41.55 MAKGNLVSEKIKLLLGLIALQLCYAGFHIVSRVALNIGVSKVVYPVYRNAIALALLSPFAYFLEKNERPPLTFSLLFQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMACVLRLEQVNFRRSDGLAKILGTIGSVGGATVITLYRGPPLLHNNYLTQGSSILEMDDPTIKVQNWRWGCIYLLGHCLSWAGWMVFQASLLKKYPAKLTITSYTCFFGLIQFLVIAGFVETDYQYWKIQSAEELFTILYAGVVASGIVFSLQTWCIHKSDPVFVAVFQPLQTFLVAIMAFLILGDRLFSGGVIGAVLITLGLYSVLWGKSKEKALEEEEDKCLKHPLLDAQKGDKEDNVVSDIP 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27089218 27091380 + CcPI632755_06g016490.1 Cco06g1649 182249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1649 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 142 - -
Cco06g1649 364 PANTHER WAT1-RELATED PROTEIN 18 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco06g1649 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 240 331 - -
Cco06g1649 364 Pfam EamA-like transporter family 14 133 IPR000620 GO:0016020(InterPro)
Cco06g1649 364 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2103 Cco-Chr5:30023300 Cco06g1649 Cco-Chr6:27089218 1.70E-105 dispersed
Cco06g1649 Cco-Chr6:27089218 Cco11g1361 Cco-Chr11:26446369 6.50E-62 dispersed
Cco06g1649 Cco-Chr6:27089218 Cco08g1649 Cco-Chr8:27981629 3.80E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1649 - - - 0.0