Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1671 ATGGCTGATCATGGTTTCAACTCCTTCCCTCTTGAAGATCCAAATTTAGAGCTCATGGCTTCTCACTTTTCTCCTTCAATTCCCAATTTCACTCACTTCTTACCATTTTCCACTACAACTACCACTACTGATATGTTTTTCCCTTCTCACCAAACCCCACCAAATTTTCCAGAAACTACTAACTTCACTACTTCCCCTGTTTTCCCATCTCATTCTGTTTTTCCACCTGCTCCTTCCTCTGTTTCTACTCATCACTTTCATGATCTCAACAAGAGAAAATCTATGGATGTTTCAGAAAGTACTTCCGGAATTTCAACTCCCCAAGTTTCTGAAACTGGGTTCAAGACTAAATATAGCTCTGGGAAAGGGAAGAGATTGAAAGGTGTTGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCTTGGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGTTGCTACAAGACCATGGGTATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTCTCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTTAACTCAGAGGCACATACCATATCAAAATTACAGAAGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATCTGCCCCTTTGA 783 41.12 MADHGFNSFPLEDPNLELMASHFSPSIPNFTHFLPFSTTTTTTDMFFPSHQTPPNFPETTNFTTSPVFPSHSVFPPAPSSVSTHHFHDLNKRKSMDVSESTSGISTPQVSETGFKTKYSSGKGKRLKGVEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEAHTISKLQKAKAHEAKELERLMREGYGGIACFHSNLPL 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27293300 27294972 + CcPI632755_06g016710.1 Cco06g1671 182271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1671 260 MobiDBLite consensus disorder prediction 93 155 - -
Cco06g1671 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983(InterPro)
Cco06g1671 260 FunFam transcription factor BEE 3-like 146 217 - -
Cco06g1671 260 Gene3D - 146 217 IPR036638 GO:0046983(InterPro)
Cco06g1671 260 MobiDBLite consensus disorder prediction 96 117 - -
Cco06g1671 260 Coils Coil 226 246 - -
Cco06g1671 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983(InterPro)
Cco06g1671 260 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983(InterPro)
Cco06g1671 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 231 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco06g1671 260 CDD bHLH_AtBPE_like 139 223 - -
Cco06g1671 260 SMART finulus 155 205 IPR011598 GO:0046983(InterPro)
Cco06g1671 260 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1671 Cco-Chr6:27293300 Cco09g0834 Cco-Chr9:7790126 1.10E-26 dispersed
Cco05g1328 Cco-Chr5:14057305 Cco06g1671 Cco-Chr6:27293300 1.60E-35 transposed
Cco08g0631 Cco-Chr8:16651876 Cco06g1671 Cco-Chr6:27293300 1.30E-38 transposed
Cco01g1702 Cco-Chr1:29741474 Cco06g1671 Cco-Chr6:27293300 1.00E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59530 PF00010 HLH 4.40E-05 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1671 - - - 0.0