Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1674 ATGAAGCCTTTCGGGTTTAACGTTGAAGAAACTGTAGAGTTTTTGCGCCATGCTGCTTTGGGGAAGCTTTGCCTTTTATATTTGGTTCCTCTGTTTTTTTTTGCTTGGGGTTTCGACAAATGGGTTTTTTCTTTCTCTAATTGGATTCCACTAGCTATTGCCGTCTGGGCGACTTTACAGTATGGGAGTTTTCAACGTCAACTACTACTAGAGGAGCTAAACAAAAAATGGAGGCAAATTGTATTGGACACCTCGCCCAGTACACCACTGGAGCACTGTGAATGGTTGAATAAGCTGTTGACTGAGATTTGGCCTAACTACATCAACCCAAAACTTTCACTAAAGTTCTCTACTACTGTTGAGAAACGATTAAAACACCGGAGGCCGAAACTTATTGAGAGAATAGAATTATTGGAGTTCTCTCTAGGGTCGTGTCCTCCTGGCTTGGGCCTTCGTGGGACTCAATGGTCAACATCTGGTAATCAGAGAATTATGCGTTTGGGTTTTGATTGGGACACAAATGAAATGAGTATTATGTTGCTTGCCAAGTTGGCAATGCCATTTACTGGAACTGCACGGATTGTTATCAACAGCATTCACATAAAGGGTGATCTTCTCTTGAGGCCAATCTTGGATGGGAGAGCAATTTTGTATTCATTTGTTTGTACTCCAGAAGTGAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAGTCTTTACCTGCAACAGAGCTGCCAGGCGTTTCTTCTTGGCTGGTTAAACTTCTAACAGACATTATAGTAAGGACAATGGTCGAACCTCGACGCCGCTGTTTCTCATTGCCAGCAGTTGATCTGAGTAAAAAGGCTGTTAGTGGTATAATATATGTGACAGTCATATCGGCCAGTAAGCTTTCCAGAAACAGTTTGAGAGGAAACTCTTCCAGGAAACCAGCGAGTACCTATATGAATAGTCCACCAGACGAAAACTTAAGTGATAAGGATGATCTGCAGACATTTGTCGAGGTGGAACTTGATGAGCTAAGTAGGAGGACTACTGTAAGATTAAGCTCCAGCCCCGTATGGAATTCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTCGGTTCAATCTTTATGAGTCTAACCCATGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAGTAAAGATGAAGTACGCTGCTGATGATTCCACAACATTTTGGGCAATAGGATCTGACTCTGAAGTAATAGCGAAGCACAGTGAGTTTTGTGGAAAAGATGTTGAAATGGTTGTCCCATTTGAAGGCGTCGATTGTGGGGAGTTAACAGTGAAGCTTATTGTTAAAGAGTGGCAATTCTCTGATGGTTCACATTGCTCGCATAATTTTCATGTTAGAGCTCAACAATCAGTTAATGGATCTTCAAACTTTCCTTCAAGAACTGGAAGGAAGATCGCCATTACCATTGTAGAAGGAAAAGATCTCAGTTTGAAGGATAAAACTGGGAAGTGTGAGTCATATGTAAAATTGGAATATGGGAAGGCTCTCCAGAAAACAAGAACTGCTATTTCTGTTAATCCTAATTGGAATCAGAAGTTTGAGTTTGATGAGATTGGAGGTGGTGAATACCTCAAGATAAAATGCTTTTGTGTAGATATATTCAGTGATGAAAACATCGGTACTGCCCGAGTAAATTTGGAAGGACTTCTTGAAGGAACAGTCAGGGATGTGTGGGTCCCTCTCGAAAAAGTAAATTCTGGAGAACTAAGGCTTATGATAGAGGCAGTCAAGGTAGATGACTATGAAGGATCAAGGGGTTCAAACATAGGCTCAAATAATGGTTGGATAGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGGACAAGCGACCCCTATGTGAGAGTTCAATATGGAAACTTGAAGAAAAGAACAAAGGTTATGTTCAAAACTTTAAATCCTCATTGGAATCAGACCTTAGAGTTCCCTGATGATGGCAGCCCTTTACTGTTGCATGTGAAAGACCACAATGCTTTACTACCCACATCAAGCATAGGCGACTGTGTTGTTGAGTATCAAAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTGAAAAGAGGAGAGATCCACATCCAAATCACAAGAAAAGTTCCAGATCTAGAGAAAGAGAAAAGAGTTAGTTTAGATTCAAGACCCACCTCGGATTCCGAATCATCTGTTACCAAGGCACATCAAGTTTCAAGTCAGATGAAGGAAACAATCAGCAAGTTTCACACTTTAATCGAGGAGGCTAATCTCGACGGTCTTTCTGCAACGTTGAGTGAACTAGAAAGCCTGGAGGAACTGCAAGAGGAATATATACTGCAGCTTGAAACTGAACAAACGCTTCTTATAAATAAGGTGAAGGAGCTTGGTCAGGAAATTCTTAATTCTCCTGCTTCAATTACTGCTCTTCTTCCACTCTGCAACCCTCAAGTTTGGTTTCCTCTTCTTTCTGCTTCTTTGGTTGCCTTCAATGCCGGACGAAACCAAACAAACAATGCCTTTCAGCCTCAATTGTTGATTAACCTTACAGATATGGCCTTCGCAACTACCAAACTATCGGAACTTCCATTGAAGAGCTCACTTCCACTCTCCTCCCACTCCCGTACTCTTCTCTCAAACCCCAATTTGTCTTTGCAGATTCTAAACACATTCTCTTCTCTCCGAACCCCCACTGAGCATAGCGGCAAAAGAACTCCTAAAACCTCCCACAATTCTGGACCCCCATCTTCTTCTTCTTCCTCTTGGATCTCCAAATGGCCTCCTGGGAGCTCTCGGTATGATCGTAAAGTTGAGAAGAAGGTGGTCCAACCGACCCGAGATGATCGGACCGATCGAGCGGAGAATCAAACGCAGTACTTCGATAAGGACAAAGGGCAGACTGCAATTGAGCGAATTGTGCTTCGCTTACGGAATTTAGGGATAGGTTCAGATGATGAGGACGAGGATGAGGAGGATAAAGACGATAACGATTTGGATTCTCCGGAGGCAATACCGGTGACTGGAGAGGAAAGACTTGGGGATTTACTTCAACGTGAATGGATTCGACCGGATGGCGCATTGGATTCGAAAGAGGATGGGGAGGATGAAATGGTTCTACCATGGGAGAGAGAGGAGGAAAGGGCTGAAGAGGAGGAGGGTGGAAGAGGGTTGAAAAGGAGAAAGATGAAGGCTCCGACATTAGCTGAATTGACTATTGAAGATGAGGAGCTGAGGCGATTGAGGAGAATGGGGATGTTTCTTAGAGAGCGGATTAATGTACCGAAAGCTGGGATTACACAGGCAGTGCTAGAGAAGATTCATGGGAAATGGAGGAAGGAGGAATTGGTAAGGCTTAAGTTTCATGAGGAGCTTGCGCACGATATGAAGACAGCACATGAGATTGTAGAGCGACGAACCGGGGGATTGGTTCTATGGAGGTCTGGAAGTGTTATGGTAGTTTACCGTGGTAGTAACTATGAAGGACCTTCTAAAACTAAGCCCCTTACAAGGGAGGGGGATGGGGTGTTCATCCCAGATGTTGCTTCTGCTGTCCCTTCGGCAATGAGTGAAAATGTTGCAGCTTCAGCTCCAGAGAAGACCAAGATGCCTATTGGGCCTCCAAAGTCTAATGAGGGCATGTCAGAGGAAGAGGCTGAATACAACCAGTTACTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTATTGATGCTGATCAGCTTCCTCCAAGTATTCCCGGTTACAAAACTCCTTTCAGGCTTCTTCCAACTGGAATGCGGTCTCGACTTACCAATGCAGAGATGACTCAGATGAGGAAATTTGCAAAATCCTTACCTTGTCATTTTGCCCTTGGGAGAAACAGGAACCATCAGGGTTTGGCTGTTGCTATACTTAAACTTTGGGAAAAAAGCCTAGTGGTTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAGGAACTTAACAGGAGGTGTGTTACTATTGAGAAATAAATATTTCATCGTCATATACCGTGGGAAGGATTTTCTCCCACCAAGTGTAGCCGTAGCTTTGGCAGAAAGGCAGGAATTAACAAAACAGATTCAAGATGTGGAAGAGAAAGCTCGAAGTAAAGTGGTTGAGGCAACTTCGTCAAGCATTGATGGACAGGCACCTGCAGGTACCTTGGCTGAATTCTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATAACTGCTGAAGAGCGTGAAAAAATGGTTGAAGAAAGCTCCAGAGCAAAAACTGCAAGACTTGTCAGACGAATTGAACATAAACTAGGTGTTGCCCAAGCGAAGAAACTTAGAGCAGAAAGATTGCTATCTAAAATTGAAGCATCCATGGTTCTTTCTGGCCCTGATGATGACCAGGAAACAATAACAGATGAGGAACGGGTCATGTTTCGGAGAGTTGGGTTACGAATGACAGCATATTTACCTATAGGCATTCGTGGTGTCTTTGATGGTGTTGTGGAAAACATGCATTTACACTGGAAACATAGAGAGCTTGTGAAGTTAATTAGCAAGCAAACAACACTTGCTTTTGTGGAAGAAACTGCAAGACTGTTAGAGTATGAGAGTGGTGGAATACTAGTTTCAATAGATAGAATTCCAAAAGGATATGCCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCCTTGAGACCAAGAAACTTACTTACAAAGGCAAAAGCATTAAAGCGTTCAGTTGCCATGCAGCGTCACGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAAAACATAGAGCAAATGAAGAAAGAAATTGGTGTCACTGAAGATTCAGATGATAATAATAACTGGTCGTCTCAGGATGGACCTGTCTCAGAATCTTTCCAAGACAAGGAAGCATCTTTGTCTGCGTTTTCAGATGGTGACGATGATGAAGATAGCATTGACGAAGACAGTGAGTACGAAGAGGATGAAGATTTTGATTTTTCCGATTCAGAAGGCACCGATGATCTACTGAACTAG 5109 42.89 MKPFGFNVEETVEFLRHAALGKLCLLYLVPLFFFAWGFDKWVFSFSNWIPLAIAVWATLQYGSFQRQLLLEELNKKWRQIVLDTSPSTPLEHCEWLNKLLTEIWPNYINPKLSLKFSTTVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEMSIMLLAKLAMPFTGTARIVINSIHIKGDLLLRPILDGRAILYSFVCTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDIIVRTMVEPRRRCFSLPAVDLSKKAVSGIIYVTVISASKLSRNSLRGNSSRKPASTYMNSPPDENLSDKDDLQTFVEVELDELSRRTTVRLSSSPVWNSTFNMILHEDTGTLRFNLYESNPCNVKYDYLASCEVKMKYAADDSTTFWAIGSDSEVIAKHSEFCGKDVEMVVPFEGVDCGELTVKLIVKEWQFSDGSHCSHNFHVRAQQSVNGSSNFPSRTGRKIAITIVEGKDLSLKDKTGKCESYVKLEYGKALQKTRTAISVNPNWNQKFEFDEIGGGEYLKIKCFCVDIFSDENIGTARVNLEGLLEGTVRDVWVPLEKVNSGELRLMIEAVKVDDYEGSRGSNIGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYGNLKKRTKVMFKTLNPHWNQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPDLEKEKRVSLDSRPTSDSESSVTKAHQVSSQMKETISKFHTLIEEANLDGLSATLSELESLEELQEEYILQLETEQTLLINKVKELGQEILNSPASITALLPLCNPQVWFPLLSASLVAFNAGRNQTNNAFQPQLLINLTDMAFATTKLSELPLKSSLPLSSHSRTLLSNPNLSLQILNTFSSLRTPTEHSGKRTPKTSHNSGPPSSSSSSWISKWPPGSSRYDRKVEKKVVQPTRDDRTDRAENQTQYFDKDKGQTAIERIVLRLRNLGIGSDDEDEDEEDKDDNDLDSPEAIPVTGEERLGDLLQREWIRPDGALDSKEDGEDEMVLPWEREEERAEEEEGGRGLKRRKMKAPTLAELTIEDEELRRLRRMGMFLRERINVPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKTKPLTREGDGVFIPDVASAVPSAMSENVAASAPEKTKMPIGPPKSNEGMSEEEAEYNQLLDGLGPRFVEWWGTGVLPIDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKFAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIRNLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALAERQELTKQIQDVEEKARSKVVEATSSSIDGQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRAERLLSKIEASMVLSGPDDDQETITDEERVMFRRVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQTTLAFVEETARLLEYESGGILVSIDRIPKGYALIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKKEIGVTEDSDDNNNWSSQDGPVSESFQDKEASLSAFSDGDDDEDSIDEDSEYEEDEDFDFSDSEGTDDLLN 1702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27321915 27334645 + CcPI632755_06g016740.1 Cco06g1674 182274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1674 1702 MobiDBLite consensus disorder prediction 1207 1229 - -
Cco06g1674 1702 SMART C2_3c 612 706 IPR000008 -
Cco06g1674 1702 SMART C2_3c 287 406 IPR000008 -
Cco06g1674 1702 SMART C2_3c 481 575 IPR000008 -
Cco06g1674 1702 MobiDBLite consensus disorder prediction 910 979 - -
Cco06g1674 1702 MobiDBLite consensus disorder prediction 730 753 - -
Cco06g1674 1702 MobiDBLite consensus disorder prediction 923 943 - -
Cco06g1674 1702 MobiDBLite consensus disorder prediction 1635 1702 - -
Cco06g1674 1702 SUPERFAMILY YhbY-like 1494 1592 IPR035920 -
Cco06g1674 1702 SMART CRS1_YhbY_2 1495 1582 IPR001890 GO:0003723(InterPro)
Cco06g1674 1702 SMART CRS1_YhbY_2 1088 1171 IPR001890 GO:0003723(InterPro)
Cco06g1674 1702 SMART CRS1_YhbY_2 1285 1369 IPR001890 GO:0003723(InterPro)
Cco06g1674 1702 MobiDBLite consensus disorder prediction 1640 1663 - -
Cco06g1674 1702 FunFam CRS2-associated factor 1, chloroplastic 1284 1380 - -
Cco06g1674 1702 ProSiteProfiles C2 domain profile. 269 406 IPR000008 -
Cco06g1674 1702 FunFam CRS2-associated factor 1, chloroplastic 1087 1182 - -
Cco06g1674 1702 Coils Coil 784 804 - -
Cco06g1674 1702 Coils Coil 1378 1405 - -
Cco06g1674 1702 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 593 IPR035892 -
Cco06g1674 1702 Pfam C2 domain 481 578 IPR000008 -
Cco06g1674 1702 Pfam C2 domain 288 396 IPR000008 -
Cco06g1674 1702 Pfam C2 domain 613 709 IPR000008 -
Cco06g1674 1702 CDD C2 613 709 - -
Cco06g1674 1702 ProSiteProfiles CRM domain profile. 1283 1380 IPR001890 GO:0003723(InterPro)
Cco06g1674 1702 MobiDBLite consensus disorder prediction 1668 1702 - -
Cco06g1674 1702 PANTHER OS01G0128800 PROTEIN 7 822 - -
Cco06g1674 1702 MobiDBLite consensus disorder prediction 1040 1078 - -
Cco06g1674 1702 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 89 275 IPR031468 GO:0008289(InterPro)
Cco06g1674 1702 ProSiteProfiles C2 domain profile. 462 576 IPR000008 -
Cco06g1674 1702 Pfam CRS1 / YhbY (CRM) domain 1495 1582 IPR001890 GO:0003723(InterPro)
Cco06g1674 1702 Pfam CRS1 / YhbY (CRM) domain 1089 1171 IPR001890 GO:0003723(InterPro)
Cco06g1674 1702 Pfam CRS1 / YhbY (CRM) domain 1285 1369 IPR001890 GO:0003723(InterPro)
Cco06g1674 1702 MobiDBLite consensus disorder prediction 302 326 - -
Cco06g1674 1702 ProSiteProfiles CRM domain profile. 1493 1593 IPR001890 GO:0003723(InterPro)
Cco06g1674 1702 Coils Coil 1613 1640 - -
Cco06g1674 1702 MobiDBLite consensus disorder prediction 999 1014 - -
Cco06g1674 1702 MobiDBLite consensus disorder prediction 947 979 - -
Cco06g1674 1702 MobiDBLite consensus disorder prediction 998 1020 - -
Cco06g1674 1702 CDD C2 484 578 - -
Cco06g1674 1702 Gene3D - 1494 1594 IPR035920 -
Cco06g1674 1702 Gene3D - 1086 1183 IPR035920 -
Cco06g1674 1702 Gene3D - 1284 1376 IPR035920 -
Cco06g1674 1702 Gene3D C2 domain 599 724 IPR035892 -
Cco06g1674 1702 Gene3D C2 domain 461 597 IPR035892 -
Cco06g1674 1702 ProSiteProfiles C2 domain profile. 594 707 IPR000008 -
Cco06g1674 1702 SUPERFAMILY YhbY-like 1087 1180 IPR035920 -
Cco06g1674 1702 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 279 398 IPR035892 -
Cco06g1674 1702 CDD SMP_SF 112 272 - -
Cco06g1674 1702 Gene3D C2 domain 277 411 IPR035892 -
Cco06g1674 1702 MobiDBLite consensus disorder prediction 302 321 - -
Cco06g1674 1702 FunFam CRM-domain containing factor CFM3B, chloroplastic 1494 1596 - -
Cco06g1674 1702 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 607 722 IPR035892 -
Cco06g1674 1702 ProSiteProfiles CRM domain profile. 1086 1182 IPR001890 GO:0003723(InterPro)
Cco06g1674 1702 SUPERFAMILY YhbY-like 1285 1377 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1674 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1674 Cco-Chr6:27321915 Cco10g1548 Cco-Chr10:28678771 4.00E-21 dispersed
Cco03g1603 Cco-Chr3:30654451 Cco06g1674 Cco-Chr6:27321915 1.30E-135 transposed
Cco05g0542 Cco-Chr5:4329885 Cco06g1674 Cco-Chr6:27321915 7.60E-133 transposed
Cco10g1446 Cco-Chr10:27570929 Cco06g1674 Cco-Chr6:27321915 8.50E-134 transposed
Cco11g0769 Cco-Chr11:8677165 Cco06g1674 Cco-Chr6:27321915 7.80E-118 transposed
Cco01g1703 Cco-Chr1:29757193 Cco06g1674 Cco-Chr6:27321915 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g700 . . . . Bpe01g00652 . . . Cmo10g00488 Cmo11g00446 . . . . Sed08g0566 . Cpe18g00578 Bhi02g00857 Tan09g1584 Cmetu02g1690 . Hepe09g0557 . . . . . . . . . . . . . Lsi06g01075 . . Cme02g01040 . Blo14g00604 . . . . . . . . . Cma10g00453 Cma11g00445 . . . . . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . Csa01g01906 Chy02g02141 .
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016343 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 8