Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1676 ATGCAATATTATTATTGCTCTATAGATGAAGATGATGAAGCTCTTCTTAGGCTATTCTACAATCTCTCCTCTTCCTTCTTCCTTCTCTTCTTCTTCCTCTCCTTCTCTTCCATTTTACTTTTCAAATCCTTCTACTTCCTTGGCTCCCCTTTATTCCCCAGAAATGAATATGAATATGAATGTGAATACAACGCGGTGTCATCCGAGGAGGAGGAGAAAGAGGAGGAGGAAGAGGAAGAAAGATATGGTAATGGAATCTATGGTAAGGTCAAAACGATGTCGTTTCTCGACAAAGAAGCTGAAACTCGGATGAGTCGATGGCAAAGCCAGCTTCCAGATAAAGAAGAAATATTATTAACGGACTTGGAGGAGCCTTGGATTACAATGGAATCCACAAACCTAGATGACCAAATTACAACCAATAGCTCAGTTTATGAGTCCCCACAAGCCTCACAACCAGATGAATATTATCTACCAGAAGATGACGACGATCAAATGCCAGAAGAACTTACAGACTCCGAGCGGGTTGTGAGACAAGTATTGAAGGTGAATTCTTGTAGAATGTCATTGGACCTGAAGAAGAAGAGATTGGTGGAGGATAATTACATTAAGGAGGAAGGTGGTGGAAAGATTATTGCTAAGGAGAGTAATAATAATAATGGGAAATATTTGGTATTTGGACCAAATGAATTGTTGGTTAAAAAAAAGAAAGAAGAAGAAGAAGAGATATTTGGGGATTCATGCACAGTTGGGTCAACTTCAAAGAGTTCATCAGAGTGGAGAAGCTCAATAAATTGTAGAGATTCAGGAACTGAAGATCCATTTTCATCTTCTTCAAGAAGAAGCTGCCCTAAGTGGGAATCCTACACTGTTTTTCAGAAATATGATGAAGAAATGATGTTTCTTGATAGAATCACTGCCCAAAAGCTTCATGAAACAGAGTCATTGAGGTCAATTAAAATGTGCCCAAGATCAATATCAGAGAGGATTGTTCATAAATTGTCCACCATAAACAAGAAAGCTTCAGATGTGAAACAAAACCCATATCATGAATTGGAAAGTGCTTATGTAGCACAAATTTGCTTGACATGGGAAGCATTAAATTGGAATTACAAGAATTTTGTAAACAAGAAATTAGGTAATTGTAAAAGATCAGATATGGACAGTGGATGTCCAGGCAAGGTTGCTCAGCAATTTCAACAATTTCAAGTTCTTCTTCAGCGTTATATCGAGAATGAGCCTTATGAACATGGTCGTCGCCCCGAGATTTATGCTCGTATGAGACTCTTGGCTCCTAATTTGCTCCAAGTCCCTGAATTTATAGATTCAGAAGATGAAGAAATAAGGGAAGGAGGAGGAGGTGGTTATGGTTCAAGAATATCCTCACCATCTTTTCTAATGATAATGGAAGATGGAATAAGGACCTACATGAATTTCCTGAAAGCAGATAAAGAGAAACCTTGCCAGATTGTAGCTTCATTTTTCAAGAGAAAAAAAAGGGCTTCTGTTGATCCAACTCTCCTCCAACTCATGAAGAAAGTTAACCAAAAAAAGAAGATGAAGCTTAAAGACCTTCGTCGTGCCGGGAAGTGCTTGAGAAAAAGGAAGCTAAGCGTAGAGGAAGAGATGGAGATTTTGATGGCTCTTATAGACTTAAAAGTGGTTTCTAGGGTTCTAAGAACTGCAGATTTAAGCGAACAACAACTCCATTGGTGTGAGGCCAAGATGAGCAAAGTTAGGATTTTGGATGGGAAACTTCATAGAGATTCCTCACCTCTTTTCTTCCCAGCTCATTGA 1797 38.73 MQYYYCSIDEDDEALLRLFYNLSSSFFLLFFFLSFSSILLFKSFYFLGSPLFPRNEYEYECEYNAVSSEEEEKEEEEEEERYGNGIYGKVKTMSFLDKEAETRMSRWQSQLPDKEEILLTDLEEPWITMESTNLDDQITTNSSVYESPQASQPDEYYLPEDDDDQMPEELTDSERVVRQVLKVNSCRMSLDLKKKRLVEDNYIKEEGGGKIIAKESNNNNGKYLVFGPNELLVKKKKEEEEEIFGDSCTVGSTSKSSSEWRSSINCRDSGTEDPFSSSSRRSCPKWESYTVFQKYDEEMMFLDRITAQKLHETESLRSIKMCPRSISERIVHKLSTINKKASDVKQNPYHELESAYVAQICLTWEALNWNYKNFVNKKLGNCKRSDMDSGCPGKVAQQFQQFQVLLQRYIENEPYEHGRRPEIYARMRLLAPNLLQVPEFIDSEDEEIREGGGGGYGSRISSPSFLMIMEDGIRTYMNFLKADKEKPCQIVASFFKRKKRASVDPTLLQLMKKVNQKKKMKLKDLRRAGKCLRKRKLSVEEEMEILMALIDLKVVSRVLRTADLSEQQLHWCEAKMSKVRILDGKLHRDSSPLFFPAH 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27347699 27351542 + CcPI632755_06g016760.1 Cco06g1676 182276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1676 598 PANTHER DNA LIGASE (DUF1666)-RELATED 12 598 - -
Cco06g1676 598 MobiDBLite consensus disorder prediction 131 150 - -
Cco06g1676 598 Coils Coil 59 79 - -
Cco06g1676 598 MobiDBLite consensus disorder prediction 247 282 - -
Cco06g1676 598 Coils Coil 508 528 - -
Cco06g1676 598 MobiDBLite consensus disorder prediction 131 168 - -
Cco06g1676 598 Pfam Protein of unknown function (DUF1666) 351 596 IPR012870 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1676 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1676 Cco-Chr6:27347699 Cco09g0168 Cco-Chr9:1494521 4.70E-41 dispersed
Cco06g1676 Cco-Chr6:27347699 Cco10g1494 Cco-Chr10:27980466 6.10E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g322 . . . Bda15g00517 Bpe12g00690 . . . . . Cma10g00234 Cma11g00269 Car10g00220 Car11g00246 . . Cpe04g01405 . . . . . . . Cla06g01468 Cam06g1621 Cec06g1684 Cco06g1676 Clacu06g1586 Cmu06g1537 Cre06g2348 . . Cone13ag0283 . . . . . Blo13g00164 . . . . . . Bma08g00063 . Cmo10g00249 Cmo11g00275 . . . . . Cpe18g00758 . . . . . . . . . . . . . . Lsi06g01332 Csa01g00383 Chy02g02363 Cme02g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007469 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36