Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1678 ATGCGTATGAGCTGTAACGGATGCAGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCTGACCATCTCCGCCCAGCTATTTTTAAATCATTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCTGTTCTGAAAGGCGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGCGATATCCGCCATGTCTCCAAACAGCAAAGCTCCGCGTCTGGTTCCGCACTTAAGAAGATCAAGACGCGGAGGCGGTTCAAACGCTCTGCGGTGGCGGTCAAGTCGAAGCCGAAGGAGGAGCCGGTGGTGGTGGTGTCGGAGTTCAAATTCGGAGACCCGACCCGGATTGTATCGGAGCCCCGGTGTTTGAAGTTTGAGTTGGATAATTGGGGGGGTCGTGAGTCGCCGGAGAAGGAGTGCGGCAGCGACCACACCGAGTGCTTGTCGGTGGAGACTGTGGAGGCTTCTTCGGTGGGCCAGAGTGGTGACGTGGAGTTGGAACTTACCTTGGGGTTTGGGCAGAGTCGGATGCTGACGTGA 744 57.12 MRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQSSASGSALKKIKTRRRFKRSAVAVKSKPKEEPVVVVSEFKFGDPTRIVSEPRCLKFELDNWGGRESPEKECGSDHTECLSVETVEASSVGQSGDVELELTLGFGQSRMLT 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27368673 27369516 + CcPI632755_06g016780.1 Cco06g1678 182278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1678 247 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cco06g1678 247 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 240 - GO:0010468(PANTHER)
Cco06g1678 247 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2313 Cco-Chr5:31710860 Cco06g1678 Cco-Chr6:27368673 3.10E-37 dispersed
Cco05g1355 Cco-Chr5:14554073 Cco06g1678 Cco-Chr6:27368673 1.20E-72 transposed
Cco05g2535 Cco-Chr5:33640458 Cco06g1678 Cco-Chr6:27368673 9.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59532 PF03195 LOB 6.30E-22 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1678 - - - 0.0