Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1698 ATGGATGAAAATGTCGACGAGCAAAGCAAACTTCCCGAACTCAAACTTGACGCTAAGCAGGCTCAAGGGTTTCTCGCATTCTTCAAAACCCTACCCCCTGACTCAAGAGCTGTTCGCTTTTTTGATCGTCGGGATTACTATACCGCCCATGGTGATAATGCAGTTTTCATTGCAAAGACCTATTACCGTACTACAACTGCTTTACGGCAACTGGGCAATGTATCTGAAGCCCTGTCTAGTGTGAGTGTCAGCAAAAATATGTTTGAATCCATTACTCGAGATCTTCTTTTGGAAAGAATGGACCATACATTGGAGCTTTATGAGGGTAGTGGTTCAAATTGGAGACTGATCAAAAGTGGATCACCTGGTAATATTGGTAGTTTTGAAGATGTTTTGTTTGCAAATAATGAAATGCAAGATAGCCCTGCTATCGTGGCACTATTTCCGTATTTCCGAGAAAATGGGTGCATTGTTGGACTAGGCTATGTTGATTTAACAAAAAGAGTGATGGGGATGGCTGAATTTCTCGATGATAGCCATTTTACAAATGTGGAGTCAGCTCTGGTTGGTCTTGGTTGTAAGGAATGCCTTCTGCCTCTAGAAAGTGGAAAGTTCGGTGATATAAAACCTCTACATGATGCATTGACAAAGTGTGGTGTGATGCTAACTGAGAGGAAGAAATCAGAATTTAAAACGAGAGATCTGGTGCAGGATCTTTCAAGGCTTGTCAAAGGTTCTCTTGAACCTATTCGAGATTTGGTTTCTGGATTTGAATTTGCACCTGCTGCCTTAGGAGCTCTTCTGGCTTATGCAGAATTACTGGCAGATGAAAGCAATTATGGAAACTTTAACATCCAGAAGTACAATCTTGATAGCTACATGAGGTTGGACTCTGCTGCCATGAGAGCATTAAACGTCCTAGAAAGCAAAACCGATGCAAACAAAAACTTCAGTTTGTTTGGTCTTATGAATAGAACCTGTACAGCTGGAATGGGTAAAAGATTGCTTCATATGTGGTTAAAACAGCCTCTGTTAGATGTCAAAGAAATTAGTTCTAGACTGGATCTTGTTCAAGCATTTGTGGAGGATACTGCTCTTCGCCAAGATTTGAGGCAGCATCTCAAAAGAATCTCAGATATTGAACGATTGACGCACTATCTCGAGAAGAGAAGAGCTGGATTGCAGCACATTGTTAAACTTTATCAGTCAAGTATAAGGCTTCCATTCATTAAAAATGCCTTGGAGAACTATGAAGGACAATTTTCCTCATTGATCAAAGAAAAGTACTTGGAATTTCTTGAGGTCTGGACTGACAATGATCACCTGAACAAATTCAATAATCTTGTGGAAACTGCTGTTGATCTTGATCAGCTTGAGAATGGAGAATATATGATTTCATCTAGTTATGACTCTGCTCTGTCTAAATTGAAAAATGTGCAAGAATCAATACAGCAGCAAATACAGGACTTGCATAGGCAAGTTGCTAATGATCTTGATCTTCCAGTTGACAAGGCTTTGAAGTTGGACAAAGGTACACAATTTGGACATGTTTTTAGAATTACTAAGAAAGAAGAACCAAAAGTAAGGAAAAAGCTCTCCACCCACTTCATTGTTCTTGAAACCCGAAAAGATGGAGTGAAGTTTACAAATACTAAACTTAAGAAGCTGGGTGACCAGTATCAGAAGATAGTTGAGGAGTACAAAAGTTGCCAGAAAGAGTTGGTTCACCGAGTAATTGAAACTGCATCATCCTTCAATGAGGTATTCCGACCTTTGGGTGAATTGCTCTCTGAATTGGATGTTTTACTCGGTTTTGCTGATTTAGCCTCTAGCTGTCCCACTCCTTATACTAGACCAGACATCACTTCATTGGATGAGGGAAATATTATCTTGGAAGGAAGTAGGCACCCCTGTGTGGAGGCTCAAGACTGGGTTAATTTCATACCAAATGATTGTAAACTAGTAAGGGGTAAAAGTTGGTTCCAAATCATTACTGGGCCTAATATGGGTGGAAAATCTACATTTATCCGACAGGTTGGAGTGAACATTCTAATGGCACAAGTAGGTTGCTTTGTTCCCTGTGACAAAGCTAGCATTTCTGTTCGTGACTGCATTTTTGCCCGCGTAGGTGCAGGTGACTGTCAACTTCGTGGAGTTTCTACCTTTATGCAAGAGATGCTTGAAACGGCATCTATACTGAAGGGAGCTACAGAGAGATCTTTGATAATCATTGATGAATTGGGCCGTGGGACATCCACTTATGATGGATTCGGTCTAGCATGGGCCATTTGTGAACATCTTGTTGAAGTGATTAAAGCACCCACTTTGTTTGCAACCCACTTCCATGAACTTACTGCACTAGCTCATGGGAACACTGATCTTGAGCCCCATGGAAAGCAAATGGTTGGTGTGGCAAATTTTCATGTCAGTGCACACATAGACTCATCAAATCACAAGTTGACAATGCTATACAAGGTTGAACCTGGAGCTTGTGATCAAAGCTTCGGGATCCATGTAGCAGAATTTGCAAATTTTCCTGCTAGTGTCGTGGCACTTGCGAGAGAAAAGGCTGCAGAACTGGAAGATTTCACCACTGATACAACGACTTCAGCCACTACTGGGAAAGAGTTACCATTAAAGCGAAAACGCGAGTTTGGTTCAGATGATATGTCCAAAGGCGTAGCGCGGGCTCGCCAGTTCTTAGAGGAGTTTTCTAATCTGCCCTTGGATAAAATGGATCTGAAGGAAGCTCTACAACAAGTGAGTCAATTGCGAGATGGTTTGAAGAAGGATGCCGTGGACTCTAATTGGCTCCAACAATTCCTCTGA 2829 41.36 MDENVDEQSKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTAHGDNAVFIAKTYYRTTTALRQLGNVSEALSSVSVSKNMFESITRDLLLERMDHTLELYEGSGSNWRLIKSGSPGNIGSFEDVLFANNEMQDSPAIVALFPYFRENGCIVGLGYVDLTKRVMGMAEFLDDSHFTNVESALVGLGCKECLLPLESGKFGDIKPLHDALTKCGVMLTERKKSEFKTRDLVQDLSRLVKGSLEPIRDLVSGFEFAPAALGALLAYAELLADESNYGNFNIQKYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEISSRLDLVQAFVEDTALRQDLRQHLKRISDIERLTHYLEKRRAGLQHIVKLYQSSIRLPFIKNALENYEGQFSSLIKEKYLEFLEVWTDNDHLNKFNNLVETAVDLDQLENGEYMISSSYDSALSKLKNVQESIQQQIQDLHRQVANDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTHFIVLETRKDGVKFTNTKLKKLGDQYQKIVEEYKSCQKELVHRVIETASSFNEVFRPLGELLSELDVLLGFADLASSCPTPYTRPDITSLDEGNIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATERSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATHFHELTALAHGNTDLEPHGKQMVGVANFHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVAEFANFPASVVALAREKAAELEDFTTDTTTSATTGKELPLKRKREFGSDDMSKGVARARQFLEEFSNLPLDKMDLKEALQQVSQLRDGLKKDAVDSNWLQQFL 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27533081 27540884 - CcPI632755_06g016980.1 Cco06g1698 182298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1698 942 CDD ABC_MSH2_euk 630 861 IPR032642 GO:0005524(InterPro)
Cco06g1698 942 FunFam DNA mismatch repair protein MSH2 617 938 - -
Cco06g1698 942 Coils Coil 911 931 - -
Cco06g1698 942 FunFam DNA mismatch repair protein 7 121 - -
Cco06g1698 942 Coils Coil 553 573 - -
Cco06g1698 942 Pfam MutS family domain IV 469 565 IPR007861 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 FunFam DNA mismatch repair protein 122 291 - -
Cco06g1698 942 ProSitePatterns DNA mismatch repair proteins mutS family signature. 740 756 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 SMART mutATP5 659 858 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 Pfam MutS domain II 145 282 IPR007860 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 862 IPR027417 -
Cco06g1698 942 Gene3D - 617 939 IPR027417 -
Cco06g1698 942 Pfam MutS domain I 23 128 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 35 923 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(InterPro)|GO:0006298(PANTHER)|GO:0006312(PANTHER)|GO:0030983(PANTHER)|GO:0030983(InterPro)|GO:0032301(PANTHER)|GO:0140664(InterPro)
Cco06g1698 942 PIRSF MSH2 6 942 IPR011184 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 SUPERFAMILY DNA repair protein MutS, domain III 297 611 IPR036187 -
Cco06g1698 942 Gene3D MutS, connector domain 122 291 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 FunFam DNA mismatch repair protein 294 511 - -
Cco06g1698 942 Gene3D DNA repair protein MutS, domain I 7 121 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 Pfam MutS domain V 662 861 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 Gene3D - 294 522 - -
Cco06g1698 942 Gene3D - 523 616 - -
Cco06g1698 942 SMART DNAend 314 642 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco06g1698 942 Coils Coil 469 493 - -
Cco06g1698 942 Pfam MutS domain III 299 606 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1698 K08735 - - csv:101215589 1753.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0442 Cco-Chr1:4396978 Cco06g1698 Cco-Chr6:27533081 6.20E-49 dispersed
Cco06g1698 Cco-Chr6:27533081 Cco09g0504 Cco-Chr9:4415970 3.80E-53 dispersed
Cco06g1698 Cco-Chr6:27533081 Cco05g0964 Cco-Chr5:8419826 2.40E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g364 . . Bda06g00491 . . . . Bma12g00941 . . Cma10g00249 . Car10g00237 . . . . . . . . . . . Cla06g01486 Cam06g1640 Cec06g1700 Cco06g1698 Clacu06g1606 Cmu06g1555 Cre06g2367 . . . Cone19ag0263 . . . . . Blo15g00365 . . Bpe07g00731 . . . . Cmo10g00269 . . . . . . Cpe18g00743 . . . . . . . . . . . . . . Lsi06g01348 Csa01g00363 Chy02g02380 Cme02g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007788 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 36