Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1704 ATGGATGCTCGCCGAGGCTCCCGCATCGTCAACCCCAAAGTTCGTCAGGTCGGATTCTTCACCCTCGACCCTCCTAATTCCCCCGACCGCACCCTCTCCGGTCCCCCCAACTGTCTCCCTTCTCAACAATCCCTATCTCCTCCCACCAATTCCTTGTCTCCGGTCATGATTCCCCCTCCCCGTCATCTCTCCGATAACCTTGCCTCTCGTTCTGCTGTTCTTCCTGTTCCGGCTCCCGCTAATTGGAGGAATTCCGCCGATCAGATTCCTGTTGGTAGTTATAACCCTTCCGAGACGCTGCTTGCGACGTCCCCTATGGCGTCGCCTTCCAGTAGAATTGAGGATGAAGAGCTGGAGATGTCAGAGGATTCTTCCAACTCCGTATGGTATCGCCGGAGCGGTTCTGGGAAGATTGCCTCGAGCTTTCCTGGCGTTGGAATCCACATGGCGGTTAAGTCGTTGGAGAATTCGCAGGCACTGCCTCTTCAGACGTTGGAACCTAATAAGCCTGCTGGAGTTGCAGAAAAGAATGGAGGACCATCCACGGAGGTACAGAATCGACAAGCACCACCAAATACTAAACCCTTGAAGGCAAAAACAACAAAGGCTGAAAGACGAGCTCTGCAGGAGGCACAACGAGCTGCAAAAGTCTCTGCAAAAGGTGAGGCTAATAAGTCAGGTACTGCTCCTGGTAAAGCTGTGAAGCAGCCAGCAGCTATGAAAGATAGCACTGCCACACCTTCGGTTGCACCTACTGACAAAAGAGGAGGTGATCGCACACTTGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCACGAATGCAGTTTGATGATAAAAGCAGGGTAGAAAAGGCTAAAAAACGAGCAGTTTTCAACCAAACTGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAGGGAACTCAACTTCCTGATCTCGTGTCAAAGTTTTTTCATCTTGACCCCATTCATCCTGCAATTTACAAGGTTGGTTTGCAATATATGGCCGGAGATATATGTGGGGGCAATGCTCGTTGTATTGCTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTAGCTATGTGTCATTCTTCAACGAGTGCAGGCCACTATCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAACCGCATTGCCAAATTGCCATTGAATCTTCCGGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATCAATCGCTTTATCAATGAAAAGATCATAATTGCAGATGAGGTCATAGTCAGACATGCTGCTACTAAAATCAGGGATGGAGACGTTTTACTCACATATGGATCATCATCTGCTGTAGAGATGCTTGTATTATATGCTCATGAGCTCGGAAAAGAATTTCGTGTTGTGGTGGTGGATTCCCGTCCAAAACAAGAAGGGCAAGCATTGCTTCGTAGGCTCATAGCGAGGGGCCTGAATTGTACATACACTCATATAAATGCCATTTCTTATGTGATGCACGAAGTAACTCGAGTTTTTCTAGGGGCTGCTGCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGCTGTTGCCATGGTTGCAAATGCATTCCATGTTCCAGTCTTAATTTGCTGCGAAGCCTATAAATTTCATGAAAGGGTACAGCTTGACTCAATATGTTTCAACGAATTAGGTGATCCGGATGCTATCTCAAAGGTTCCCGAAAGGAAGGATATTAATTATCTAGATAATCTGACTGCTAAAGATCAACTGCAACTTCTAAATTTAATGTATGACGCTACACCTTCAGATTACATCTCAATGATCGTCACAGATTATGGCATGATTCCACCTACAAGCGTGCCAGTAATCGTGCGTGAGTACCGGAGAGAGCACCTGTGGATATAA 1962 45.97 MDARRGSRIVNPKVRQVGFFTLDPPNSPDRTLSGPPNCLPSQQSLSPPTNSLSPVMIPPPRHLSDNLASRSAVLPVPAPANWRNSADQIPVGSYNPSETLLATSPMASPSSRIEDEELEMSEDSSNSVWYRRSGSGKIASSFPGVGIHMAVKSLENSQALPLQTLEPNKPAGVAEKNGGPSTEVQNRQAPPNTKPLKAKTTKAERRALQEAQRAAKVSAKGEANKSGTAPGKAVKQPAAMKDSTATPSVAPTDKRGGDRTLDKERKKDAPPPRMQFDDKSRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFHLDPIHPAIYKVGLQYMAGDICGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGSYVSFFNECRPLSVSMGNAIRFLKNRIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSSAVEMLVLYAHELGKEFRVVVVDSRPKQEGQALLRRLIARGLNCTYTHINAISYVMHEVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDAISKVPERKDINYLDNLTAKDQLQLLNLMYDATPSDYISMIVTDYGMIPPTSVPVIVREYRREHLWI 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27598309 27602778 - CcPI632755_06g017040.1 Cco06g1704 182304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1704 653 Gene3D - 439 646 IPR042529 -
Cco06g1704 653 SUPERFAMILY NagB/RpiA/CoA transferase-like 300 646 IPR037171 -
Cco06g1704 653 MobiDBLite consensus disorder prediction 255 283 - -
Cco06g1704 653 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 46 650 - -
Cco06g1704 653 MobiDBLite consensus disorder prediction 16 63 - -
Cco06g1704 653 Pfam Initiation factor 2 subunit family 346 636 IPR000649 GO:0044237(InterPro)
Cco06g1704 653 MobiDBLite consensus disorder prediction 179 195 - -
Cco06g1704 653 MobiDBLite consensus disorder prediction 26 51 - -
Cco06g1704 653 MobiDBLite consensus disorder prediction 161 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1704 Cco-Chr6:27598309 Cco06g1705 Cco-Chr6:27605929 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1704 K03680 - csv:101215104 1218.37