Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1705 ATGGATGCTCGCCGAGGCTCTCGCGTCGTCAACCCCAAAGTTCGTCAGGTCGGATTCTTCACTCTCGACGCTCCTAATCCCCCCGGCCGCTCCCTCTCCGGTCCCGCCGACTGTGCCCCTTCTCAACAATCCCTCTCTCCTCCCACCAATTCCTTGTCTCCTGTCATGATTCCCCCTCCCCGTCATCTCTCCGATAACCTCGCCTCTCGCTCTGCTGTTTTTCCTGTTCCAGCTCCCGCCAATTGGAGGGATTCCGCCGATCATATTCATGTTGGCAGCTATAACCCCTCCGAAACACTGCTTGCTACGTCGCCTTCCACTAGAATTGGGGACGGAGAGCTGGACATGTCCGAGGATTCTTCCGCCTCCGTTCCATATCGCCGGAGTGGTTCCGGGAAGATTGCTTCGAGCTTTCCCGGCGTTGGAATCCACATGGCGGCTAAGTCGTCGGAGATTTCGCAGGCGCTGTTGGAACCTAATAAGGCTTTTGGAGTTGCAGAAAAGAATGGAGGGGCTTCCACAGAGGTACAAAATCGACAGCCACCATCAAATTCAAAACCCCTGAAGGCAAAAGCAACAAAGGCTGAAAGACGAGCATTACAGGAGGCACAACGAGCTGCAAAAGGTGAAGCGAAGAAGCCAGGTAATGCCCCTGGTAAAGCTGTGAAGCAGCCCTCTGCAATGAGAGATAGCACTGCCACACCTTCGGTGGTATCTACTGACAAAAGAGGAGGTGATAGAACACATGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCACGAATGCAGTTTGATGATAAAAACAGGGTAGAAAAGGCTAAAAAGCGAGCAGTTTTCAACCAAACTGAAGCTAGAAATAGGGTTGAATTATTTCGCCATTTGCCACAATACGAGCAGGGAACTCAGCTTCCTGATCTTGTGTCAAAGTTTTTCCAACTTGACCCCATTCATCCTGCCATTTACAAGGTTGGTTTACAATATATGGCCGGAGATTTACATGGAGGCAATGCTCGTTGTATTGCTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTTTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTATGTGTCATTCTTCAACGAGTGCAGGCCTCTGTCTGTTAGCATGGGAAATGCAATTAGGTTTTTGAAAAACCTCATTGCCAAACTACCATTGAATCTTCCAGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATCAATCGCTTTATCAATGAAAAGATTATAATTGCAGATGAGGTCATAGTTAGACATGCTGCTACCAAAATCAGGGATGGAGATGTTCTTCTCACATATGGATCTTCATGTGCTGTAGAGATGCTTCTATTATATGCTCATGAGCTCGGAAAAGAATTTCGTGTTGTGGTGGTGGATTCCCGTCCAAAACTAGAAGGGCAAGCATTGCTTCGTAGGCTCATAGGGAGGGGCCTAAGTTGTACATACACTCATATAAATGCTATTTCTTACGTGATGCAGAAAGTAACACGAGTTTTTCTGGGGGCTGCTGCAGTATTATCTAACGGAACTGTATATTCAAGAGTGGGAACTGCAGCTGTTGCCATGGTTGCTAACGCATTCCATGTTCCAGTCTTAATCTGTTGTGAAGCCTATAAATTCCATGAAAGGGTACAACTTGATTCAATATGTTTCAATGAATTAGGTGATCCGGATACTATCTCAAAGGTTCCAGGAAGGAAGGATATTAATCTAGATAATTTGACTGCTAAAGAACAACTGCAACATCTAAATTTAATGTATGATGCCACGCCTTCAGATTACATCTCAATGATTGTCACAGATTATGGCATGATCCCACCTACAAGTGTGCCAGTGATCGTGCGCGAGTATCGGAGAGAGCACCTGTGGATATAA 1923 46.13 MDARRGSRVVNPKVRQVGFFTLDAPNPPGRSLSGPADCAPSQQSLSPPTNSLSPVMIPPPRHLSDNLASRSAVFPVPAPANWRDSADHIHVGSYNPSETLLATSPSTRIGDGELDMSEDSSASVPYRRSGSGKIASSFPGVGIHMAAKSSEISQALLEPNKAFGVAEKNGGASTEVQNRQPPSNSKPLKAKATKAERRALQEAQRAAKGEAKKPGNAPGKAVKQPSAMRDSTATPSVVSTDKRGGDRTHDKERKKDAPPPRMQFDDKNRVEKAKKRAVFNQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDPIHPAIYKVGLQYMAGDLHGGNARCIAMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNLIAKLPLNLPESEVKATLCSDINRFINEKIIIADEVIVRHAATKIRDGDVLLTYGSSCAVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLIGRGLSCTYTHINAISYVMQKVTRVFLGAAAVLSNGTVYSRVGTAAVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDTISKVPGRKDINLDNLTAKEQLQHLNLMYDATPSDYISMIVTDYGMIPPTSVPVIVREYRREHLWI 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27605929 27612189 + CcPI632755_06g017050.1 Cco06g1705 182305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1705 640 Gene3D - 427 633 IPR042529 -
Cco06g1705 640 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 46 637 - -
Cco06g1705 640 MobiDBLite consensus disorder prediction 190 209 - -
Cco06g1705 640 MobiDBLite consensus disorder prediction 20 63 - -
Cco06g1705 640 MobiDBLite consensus disorder prediction 242 272 - -
Cco06g1705 640 MobiDBLite consensus disorder prediction 102 134 - -
Cco06g1705 640 SUPERFAMILY NagB/RpiA/CoA transferase-like 287 633 IPR037171 -
Cco06g1705 640 Pfam Initiation factor 2 subunit family 333 623 IPR000649 GO:0044237(InterPro)
Cco06g1705 640 MobiDBLite consensus disorder prediction 36 51 - -
Cco06g1705 640 MobiDBLite consensus disorder prediction 170 272 - -
Cco06g1705 640 MobiDBLite consensus disorder prediction 227 241 - -
Cco06g1705 640 MobiDBLite consensus disorder prediction 171 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1704 Cco-Chr6:27598309 Cco06g1705 Cco-Chr6:27605929 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1705 K03680 - csv:101214144 1180.24