Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1707 ATGCACCTTAGCTTCACATTGGAACTCCACTTTTCTTTCGGAAAGGATTTTGCCTTTAATTATTTCGAATTTCATATAATTAAAGCGCGGAGGAGTAATCCCATACGCTCAGAAGCATTCGAAGCCGAAGCCCACCCCACAGCTTTCCAAATAATTCTTTCCACTTTCCTGGAAAAATTTTCAAACCCATTTGGATTAACTGCAGTTTTCGAAGTGGGTCAGTGCGACTTTTCTGGGTATGTTAAGGCAGTGAGAAAATCTACGAGAAGAATGCCTGTTTCGACTCGGTCTCAGATCATGAACGACGGACAGATGGATCAAATTCCAGGTCAAGAAGACAAACAGCAACTGAATCTTCCACCTAGAAATCTTCACCATGGATTGAAAGAGAAGATGAAGGCATTAACCCTTTTGTACGAGCAACAGAAGCTTGCTTCAGCAGCTCTTAAGAGGCCGTCACCAAAAGGGGAAGATCTAAGATTCACATCACATCCGAGCGTTGAGCTTAATGGTTCTTGTAAGAAAGAGGAGAAAGAGCCGAAGCTTGAGAATGTAATGAGAGAAAATGCAATGCCTAATTCAACTGTTACAAGAACTTATGTTCTTCCCCAACCACCGATGGATGATGCAAAGGAGAATGTAGTGGTTGGAACTGATCGGATTGTCGGGTTTTCATGCTCAAAAAAGGCGAGTTTGTCAACGAATGTGGCGAGGAAATTGTCGTTAGGGAACCCAATGCCTGTGGTGGAAGTGAAGGAGAATGTGGGGTGTAAGAAATTGCAAGAAATGGAGGAATTGGGGAGTTTTTCAGAGAAGGAGAGTTTGGGGGAAAGTCGGATTTTGGTGTTTGTGAGGCTGAGACCAATGGCTAAGAAGGAAAAGGAAGCGGGAGCGAGGAGTTGTGTTAAAATAGTGAATAGAAGAGATCTTTATTTGACAGAGTTTGCTAATGAGAATGATTATTTGAGACTGAAGAGGCTTCGTGGACGCCATTTTACCTTCGACGCTTCATTTCCTGACACCACTAATCAGCAAGAAGTCTATTCCACCACGACAGCAGAGCTTGTAGAAGCAGTTCTGCAGGGAAGGAATGGTTCTGTGTTCTGCTATGGTGCCACTGGGGCTGGGAAAACCTACACAATGCTAGGAACGGTTGAGAACCCTGGAGTTATGGTTTTGGCTATCAAAGATCTCTTCACCAAGATTAGGCAGAGGAGCTGTGATGGGAACCATACAGTCCACCTCTCTTACATTGAGGTCTACAATGAAACAGTCAGAGATTTGTTGTCCCCAGGAAGGCCATTAGTCCTAAGAGAAGACAAGCAGGGAATTGTTGCTGCTGGTCTTACACAATACAGAGCTTACTCCACAGATGAAGTGATGGCCTTGCTTCAGCGAGGAAACCAAAACCGAACGACTGAACCGACCCGTGTTAACGAAACTTCTTCGCGTTCCCATGCTATACTGCAGGTTACAGTTGAATATCGAGCCAGAGATGGAGGAATGAATGTTGTAAACCGAGTAGGGAAGCTCTCATTGATTGATCTCGCTGGGTCAGAGAGGGCACTTGCCACAGATCAGAGGACATTAAGATCTCTTGAGGGAGCAAACATAAACAGATCACTACTTGCTCTAAGTAGTTGCATCAATGCCCTTGTGGAAGGAAAGAAACACATACCTTATAGGAATTCAAAACTCACACAACTTCTGAAGGACTCATTAGGAGGAGCTTGTAATACTGTGATGATTGCAAATCTTAGCCCAAGCAACCTATCATTTGGTGAAACCCAAAATACACTTCATTGGGCTGATCGTGCTAAAGAGATCAGAACTAAGGTTGCAGAAGCAAATGAGGAGATAATGAAGGCACCGGAATCTGATTCAGACCAGGCGAAACTACTGCTTGAATTGCAGAAAGAAAATCGTGAATTGCGTGTGCAGTTGGCTCGCCAGCAACAGAAGTTACTTACATTACAGGCACAATCTCTGGCTGCAGTTGCTTCGCCAACCCCATCTTCGGCCACATCTCTTCTAACCCCTCCAACATCTGTTCACCAAAATGAAAAACGAAAACCAAGATCATCCTTCTTGAATGGGAACTGTTTCACACCAGAATCTCGAAAGAAGGGAGCAGAGGAAGGAGTTAGAGAGCTTCGCCGCACGGTGAAACAATTAGAAGCAGAACTTGAGAAGACAAAGAAAGAGCACGTTGTGCAGTTGAAGCACAAAGATGATCTTATCAATGAGCTCTTGAAGAAAAGTGAAAAAACAGCAGCATTGGTGAGAGGAGAAAGGGTAAAGAGGGTAGAGACAAGAACCAGCTTAAGACCAAAGGAGCCAAGCATAGGTGAACTGAAGAGCCCAAGCCACCGTTTCAAATCACCAGCTCCAACAGCTAAGAAACGAAGCTTTTGGGACATAACAACAACTAATAGCCCATCTGTTGCCACAATAAATGGAAGGAAGACAAGAAGTCATGTACTTGCAGAGCCTCCTCCTACTGCTGCTCCCTCTATGCTTCGGCAGCCGGGTTTTGCTCGACAGAAACCATAG 2553 44.5 MHLSFTLELHFSFGKDFAFNYFEFHIIKARRSNPIRSEAFEAEAHPTAFQIILSTFLEKFSNPFGLTAVFEVGQCDFSGYVKAVRKSTRRMPVSTRSQIMNDGQMDQIPGQEDKQQLNLPPRNLHHGLKEKMKALTLLYEQQKLASAALKRPSPKGEDLRFTSHPSVELNGSCKKEEKEPKLENVMRENAMPNSTVTRTYVLPQPPMDDAKENVVVGTDRIVGFSCSKKASLSTNVARKLSLGNPMPVVEVKENVGCKKLQEMEELGSFSEKESLGESRILVFVRLRPMAKKEKEAGARSCVKIVNRRDLYLTEFANENDYLRLKRLRGRHFTFDASFPDTTNQQEVYSTTTAELVEAVLQGRNGSVFCYGATGAGKTYTMLGTVENPGVMVLAIKDLFTKIRQRSCDGNHTVHLSYIEVYNETVRDLLSPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRVNETSSRSHAILQVTVEYRARDGGMNVVNRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANLSPSNLSFGETQNTLHWADRAKEIRTKVAEANEEIMKAPESDSDQAKLLLELQKENRELRVQLARQQQKLLTLQAQSLAAVASPTPSSATSLLTPPTSVHQNEKRKPRSSFLNGNCFTPESRKKGAEEGVRELRRTVKQLEAELEKTKKEHVVQLKHKDDLINELLKKSEKTAALVRGERVKRVETRTSLRPKEPSIGELKSPSHRFKSPAPTAKKRSFWDITTTNSPSVATINGRKTRSHVLAEPPPTAAPSMLRQPGFARQKP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27618002 27622797 + CcPI632755_06g017070.1 Cco06g1707 182307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1707 850 SMART kinesin_4 277 617 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g1707 850 Pfam Kinesin motor domain 285 609 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g1707 850 Coils Coil 708 742 - -
Cco06g1707 850 FunFam Kinesin-like protein 273 614 - -
Cco06g1707 850 MobiDBLite consensus disorder prediction 670 715 - -
Cco06g1707 850 Gene3D Kinesin motor domain 271 615 IPR036961 -
Cco06g1707 850 PRINTS Kinesin heavy chain signature 362 383 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g1707 850 PRINTS Kinesin heavy chain signature 476 493 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g1707 850 PRINTS Kinesin heavy chain signature 510 528 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g1707 850 PRINTS Kinesin heavy chain signature 559 580 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g1707 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 654 IPR027417 -
Cco06g1707 850 MobiDBLite consensus disorder prediction 771 786 - -
Cco06g1707 850 MobiDBLite consensus disorder prediction 771 850 - -
Cco06g1707 850 PANTHER CENTROMERE PROTEIN E 277 756 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cco06g1707 850 Coils Coil 634 661 - -
Cco06g1707 850 MobiDBLite consensus disorder prediction 803 821 - -
Cco06g1707 850 MobiDBLite consensus disorder prediction 148 170 - -
Cco06g1707 850 ProSiteProfiles Kinesin motor domain profile. 279 609 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g1707 850 MobiDBLite consensus disorder prediction 670 685 - -
Cco06g1707 850 ProSitePatterns Kinesin motor domain signature. 509 520 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1707 K26157 - - csv:101222937 1402.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1566 Cco-Chr4:31031528 Cco06g1707 Cco-Chr6:27618002 1.70E-71 dispersed
Cco06g0946 Cco-Chr6:12548318 Cco06g1707 Cco-Chr6:27618002 6.80E-50 dispersed
Cco06g1707 Cco-Chr6:27618002 Cco10g1871 Cco-Chr10:32307492 4.90E-52 dispersed
Cco06g1707 Cco-Chr6:27618002 Cco04g1043 Cco-Chr4:25977878 9.50E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007142 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34