Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1709 ATGCCACGACGCACGACGATCTCTTTCAATGGGCGCAATATATCAAACATTTGGAACAAAACCACAATAACCTCTGATAAAAATGCATATATCAACAATGCCCTTCCTCCACCACACCACCACCTCGATCGCCTCCTTCGATTCCGATCTTCTTCAACCGGTGGGATCGCCGTCGTCATTTTCCGGTTTCGCGTATTCGTTTTTTCCGTTGGCTTCCGGGACACCTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAAATTATCAAAGAGATGTTACCCCCTGATGTACGGGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAACACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAGGACTCATTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCTGAGGCACGTGCAAGAATGAATGGCAGTAACACCGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 711 45.85 MPRRTTISFNGRNISNIWNKTTITSDKNAYINNALPPPHHHLDRLLRFRSSSTGGIAVVIFRFRVFVFSVGFRDTSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27627850 27631564 - CcPI632755_06g017090.1 Cco06g1709 182309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1709 236 MobiDBLite consensus disorder prediction 220 236 - -
Cco06g1709 236 PANTHER PROTEIN DR1 HOMOLOG 81 234 IPR044255 -
Cco06g1709 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 94 159 IPR003958 -
Cco06g1709 236 FunFam Negative cofactor 2 beta 86 223 - -
Cco06g1709 236 Gene3D Histone, subunit A 84 224 IPR009072 GO:0046982(InterPro)
Cco06g1709 236 MobiDBLite consensus disorder prediction 214 236 - -
Cco06g1709 236 SUPERFAMILY Histone-fold 92 222 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1709 Cco-Chr6:27627850 Cco09g0586 Cco-Chr9:5161785 5.20E-12 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59536 PF00808 CBFD_NFYB_HMF 6.40E-22 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1709 K21751 - csv:101214627 303.138