Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1710 ATGGAATCAGACGAAGAAGATTTCATTTTCTATGGAACTCCAATTGAGCGGGAGGAAGAGATCAACAGCCGTAAAAAGAAATCTGTGGCTGACGCTTCCGGTACCATGCGAAGCCTCCCACACTGGAAACAAGAGGTTAGAGATGAGGAAGGGCGTAGAAGATTTCATGGAGCATTCACTGGAGGATTTTCTGCTGGCCATTACAATACAGTGGGCTCAAAAGAAGGTTGGACTCCACAGTCATTTACGTCGTCCCGAAAGAATCGAGCTGAAGTCAAGCAGCAAAACATTTTGAATTTCTTAGACGAAGATGAAAAAGCTGAATTGGAAGGTCGAGGCCTGGGGACATCTTCTCAGTTTGATACATTTGGGTTCACAGCAGTAGAGCTTGCTCGTAAACAAGCTGACAAGGAGCAACAACAGAGGCCGTCTGCTATTCCTGGACCTGTTCCTGATGAGTTAATTGTTCCAGCTGCAGAATCCATAGGTGTGAAGTTACTATTAAAGATGGGATGGCGCCATGGACGTGCAATAAAGGACTCACGAGCTAATTCCCTTTATGATGCTCGAAGAGATGCACGAAAAGCATTTCTAGCATTTTCAGCTAATGATGTGAAATCGGAAATCCCCAGTTCTGAACCATTTCAGGAGGATGATGATATTGTTTCTCCTCAACCTGCCAAGGGTGATATTTCGTCTTCTCAAAGCACACCAGTTTATGTGATCAACCCAAAACAGGATTTGCACGGTTTAGGTTTTGATCCTTACAAGCATGCACCGGAGTTTAGGGAAAAGAAAAGAGCACGCACAGCTGGGAATCAGGAGGGTTACAAACAAATTTTCTCCACGAAGAATAATCTTTTTGGCTTTAGGACTGACAGGATTGCTTCTGGCTTTGGCATTGGTGCACTTGAAGAACTTGATGTTGAAGATGAGGATGTTTATACCTCTGGTTATGAGTTTGAGGAAACATATATACAAGAAGATGATGAACCACCTTCTAAATTGATCACAGATGGGAAACAAAAGTTGATTGGAAAAAAACTTGAGGGTGTCTTGCCTGGATTTAGAGTTGCCTTGAAATCTGACTACCAGTTGGAGAGGTTTGATCCTCCTGTAATACCTAAGGACTTTATACCGCAGCACAAATTTGTAGGGCCCCTCAATGGTGGCTATAAGCTTGCTGACACCCCTCCTGTCGAGGTTCCTCCTCCTGAGGATAATAATCTGAAACTTCTAATTGAAGGAGTGGCAACTTTGGTTGCTCGCTGTGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAATAAGTCAAATCCATTATTTAGTTTTCTTAGTGGAGGAACTGGCCATGAATATTATTCAAGGAAGCTATGGGAGGAGCAACTGAAGCACGGGGACCAACCAAAGCCTCAATTTGATGATAAATTGTCCCCAAGCTTGGAGAAGATGACAGCTGAAAGTCGTGGAAAAATCCTTGGTGAAAAGCCTTTGGCAAGAAGCTCTAAAGAGTTGAATCCACTTCCACCCTCGACTTCTGATGGTGTGCACGTCCAATACAATCTTTCAGATACATTTACTAAATCTACATCATCCGGTGGGATGCCAGAGGTTGTCAAACCTTTCAAGGATGATCCAGCTAAGCAAGAAAGATTTGAGCATTTTTTAAAGGAAAAGTATCAAGGAGGCCTGCGCACTGGTGCTCCTGTTGGAGCTATTAACATGTCAGAAGCAGCTCGTGCACGTGAACGCTTGGACTTTGAGGCTGCTGCAGAGGCAATTGAGAAAGGGAAAGGGTTGAAAGAAGCTAAGCTCTCTGCCGAGCACTTTGTGGATTTTTTAGCCACCGGAGGAATGCAGTTTACCTCTGGTGGTGTAGAGGAAGTCAAAGATACGAAACTAGAAAGTTTAATGATGGAGAAAATGATCCCAAAACGGGAAGAATATCAGTGGCGTCCTGCTCCTATTCTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGAAAGCCACCACCAGCTCCTAGGATGAGGAGCAAGTTGGATACACTTATTTTCACATCAAATTCTGTCAAACCGACAAAGGTTGAGGAGCCTTTAACCTCAACACCTCATTCATTACCTCAATCGAATGCTGGTGAAAAAGACAAAGATGCATCTGAAAATGTAAATGAAAATGTAGAAGTTGAATGTGTTGATCGGCCTGTTGATCTATATAAGGCTATTTTCTCTGATGAGTCGGAAGACGAAGAGAGTACATCAACTCTCAAGCAAGCCGAGGATCCTAAAAAGAAAGTTGAAGTGGCTAATACAACACTAAACCGTTTGATTGCTGGTGACTTTCTGGAATCTTTGGGTAAAGAACTGGGCTTGGAAGTGCCTCCAGATCTGCCTCCATCAAAGAAAGGCCAAACTTCAGGTCCTCAGACAGAAGCTGTACCTGTAGGTGAGCAAAAGACCAATATCCTTTCAGTTGAAGATAAGTCTTATCCGAACCCATCTTCCACTGTGATTCTATCAGACCATCGAATGACAGGCACCACGGAACTTGATCTAAATGGCAGAAAAGAAGACAATGAACTCAATCATAACTCAGCTGGAACTGGCGGTAAAATTATGGAGACCAGTTCTTCCAAGAAAACTTTGGGTAAAGTTTATGAAGAAAAGATGTATAAGGACAAGGGAGATAGGAAGGCTAACAACAGGCATGTTGACGACATTCATCGTGATTGTAGCAACAGCTCATCATCAGAAGATGAAAAGAGAAGAAAACGTTCAAGGAGGCGCAGGTATAAAAGTAGCGACTCAGAGGATAGTGGGTCAAGTAATTATCGTATGAAAGAGCACTCTAGATCACGAGATAGAAAGAAAGGATCTTCTCAAGAAAAGAAGAGCCGGAGAAAACACTCAAAACATCACAAGCACAGACGTAGAGATTCTTCCCCCAGAGATCATCATCGCTCTGGAAAAGATCGTACTGCATCCGAGAGATAG 2994 43.12 MESDEEDFIFYGTPIEREEEINSRKKKSVADASGTMRSLPHWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKAELEGRGLGTSSQFDTFGFTAVELARKQADKEQQQRPSAIPGPVPDELIVPAAESIGVKLLLKMGWRHGRAIKDSRANSLYDARRDARKAFLAFSANDVKSEIPSSEPFQEDDDIVSPQPAKGDISSSQSTPVYVINPKQDLHGLGFDPYKHAPEFREKKRARTAGNQEGYKQIFSTKNNLFGFRTDRIASGFGIGALEELDVEDEDVYTSGYEFEETYIQEDDEPPSKLITDGKQKLIGKKLEGVLPGFRVALKSDYQLERFDPPVIPKDFIPQHKFVGPLNGGYKLADTPPVEVPPPEDNNLKLLIEGVATLVARCGKLFEDLSREKNKSNPLFSFLSGGTGHEYYSRKLWEEQLKHGDQPKPQFDDKLSPSLEKMTAESRGKILGEKPLARSSKELNPLPPSTSDGVHVQYNLSDTFTKSTSSGGMPEVVKPFKDDPAKQERFEHFLKEKYQGGLRTGAPVGAINMSEAARARERLDFEAAAEAIEKGKGLKEAKLSAEHFVDFLATGGMQFTSGGVEEVKDTKLESLMMEKMIPKREEYQWRPAPILCKRFDLIDPYMGKPPPAPRMRSKLDTLIFTSNSVKPTKVEEPLTSTPHSLPQSNAGEKDKDASENVNENVEVECVDRPVDLYKAIFSDESEDEESTSTLKQAEDPKKKVEVANTTLNRLIAGDFLESLGKELGLEVPPDLPPSKKGQTSGPQTEAVPVGEQKTNILSVEDKSYPNPSSTVILSDHRMTGTTELDLNGRKEDNELNHNSAGTGGKIMETSSSKKTLGKVYEEKMYKDKGDRKANNRHVDDIHRDCSNSSSSEDEKRRKRSRRRRYKSSDSEDSGSSNYRMKEHSRSRDRKKGSSQEKKSRRKHSKHHKHRRRDSSPRDHHRSGKDRTASER 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27636046 27646563 + CcPI632755_06g017100.1 Cco06g1710 182310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1710 997 SMART surpneu2 411 463 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco06g1710 997 ProSiteProfiles SURP motif repeat profile. 413 457 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco06g1710 997 Gene3D Surp module 392 466 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco06g1710 997 MobiDBLite consensus disorder prediction 692 722 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 842 997 - -
Cco06g1710 997 FunFam G patch domain-containing protein TGH 377 467 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 464 517 - -
Cco06g1710 997 Pfam Surp module 413 460 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco06g1710 997 MobiDBLite consensus disorder prediction 863 880 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 790 817 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 802 817 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 71 89 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 744 763 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 848 862 - -
Cco06g1710 997 Pfam Protein of unknown function (DUF1604) 39 119 IPR011666 GO:0006397(InterPro)
Cco06g1710 997 MobiDBLite consensus disorder prediction 931 959 - -
Cco06g1710 997 SUPERFAMILY Surp module (SWAP domain) 392 462 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Cco06g1710 997 MobiDBLite consensus disorder prediction 881 922 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 960 983 - -
Cco06g1710 997 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 2 978 - GO:0003723(PANTHER)|GO:0005634(PANTHER)
Cco06g1710 997 MobiDBLite consensus disorder prediction 464 498 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 692 710 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 68 89 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 21 50 - -
Cco06g1710 997 MobiDBLite consensus disorder prediction 208 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1710 K13123 - - csv:101222702 1689.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33