Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1722 ATGGCTCAAGATACGTCTCCTAGCATTGAATCACCTCGGAGGCGTTCTGGCCTTTTGCGAGATCAAGTTCAGTTAGTTAGGAAAAAGGACTCGAATCGCTACGAGATCCTTCCCATTCAAGATCCTCTTTCATTTGAGAAAGGTTTCTTCATTGTAATACGTGCGTGCCAGTTATTGTCTCAAAAGAATGATGGGATAATTCTAGTAGGAGTGGCAGGACCATCGGGAGCTGGGAAGACTGTATTTACTGAGAAGGTGCTTAACTTTATACCCAGCATTGCTGTTATCACGATGGATAACTACAATGATTCCAGTCGTATCATTGATGGCAACTTTGATGATCCACGCCTAACAGATTATGATACATTGCTGGAAAATATTAATGGTTTAAGAGAAGGAAAACCTGTCCAGGTTCCTATTTATGATTTCAAGACTAGCAGTCGCGTGGGTTACAGGACTCTTGAAGTTCCCGAATCAAGGATTGTCATTATTGAGGGCATCTATGCTTTAAGTGAAAAATTGCGTCCATTGCTAGATCTTCGTGTATCAGTGACCGGTGGTGTTCATTTTGACTTAGTGAAACGGGTACTACGTGATATTCAGCGAGCTGGCCAAGAGCCAGAAGAAATAATACATCAAGTTTCTGAAACGGTCTATCCAATGTATAAAGCTTTTATTGAGCCAGATCTTCAGACTGCCCATATAAGAATTATTAACAAATTCAATCCCTTTACCGGTTTCCAGAATCCTACTTATATTCTTAAGTCAACGAAAGCAGTACCTGTGGATCAAATTAAGGGTGTTATATCCGAGAATCACAAGGAGTCTACTGAGGAAACTTATGACATTTATCTTCTTCCTCCTGGTGAAGATCCTGAAGTGTGTCAATCCTATCTGAGGATGAGGAATAGGGATGGCAAATACAATCTCATGTTTGAGGAGTGGGTTACAGATATTCCATTCATAATATCACCTAGAATAACTTTTGAAGTTAGTGTGCGCCTTCTTGGAGGGCTTATGGCACTTGGATACACAATTGCCACTATTCTTAAAAGAAGCAGCCACATATTCTCTGATGATAGGGTGTGTATAAAGATTGATTGGTTGGAGCAACTTAACCGAAAATACATTCAGGTGCAAGGAAAAGATCGGGTGCACGTTAAATGTGTTGCTGAGCAGTTGGGTTTGGATGGTTCCTATATCCCTCGAACTTATATTGAACAGATACAGCTGGAGAAGCTTGTTAATGATGTTATGGCCTTGCCGGATGATTTAAAAACCAAGCTCAGCATAGACGACGAGTCACTTTCGAGTCCAAAGGAAGCACTTTCCCGAGCTTCTGCAGATAGGAGAAATAAGTACCTTAACCGTGGCTTATCACAATCATTTTCAAATCGGAGGGACAAGACCTTGTCAAAGCTTACAAAGCTTGCTGTCAATAATAGGAGATTTGATGTGAGGGCTCCAGATTCCCCTGCAGTAGTCTCTAACCAGGGAGCTATTACTCAACTTTCAGAACAGATTTCTACTCTCAGTGAGAGAATGGATGAGTTCACAACTCGTATTGAAGAGCTGAACTCTAAGATCTGTACTAGAAAAATTTCTGCTAGCCAGCAGAACTTGGTTTCACAATCCGATGCGTGCAACAATGGCTCCGGAGCAACTTCAATTTTCATATCTGGCTTGAGTAACGGTGCCTTAACCGGATCGCTACTGCCTCATTCTTCATCATCCTCCCAATTGGCCAAGGAATCTCCCTTGCTGGAAGAGATACAAAACATAGCACGGGCGCAGCGTCAAATCATTCTCCAAGTCGACAATTTGAGCAATCTTCTCCGGGAGCACTTGAGTGATAGGGGTCGCCGGGGAAAAGCTGACGACGAAGGGAGGTGGAGGATTACTGATCTTGAATCCATCAGCACCCCACTTTTGCTTACACTTGCAGTTGAAAAGTCAACCATGCCGACCGTAAGCGTCGGAAGAGATCTTCTATATGCTGCCATTGGAAGAACTTATACGCAGGAAGAGTTTGAAGAGCTGTGCTTTAGTTTTGGAATTGAGCTTGATGACGTTACGACAGAGAAGGCGATCATTAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATTGAAGTCCCCGCAAACAGATACGATTTGCTCTGTCTTGAAGGACTTGCTCAAGCCCTGCGCATTTTTAATAAGCAGGAGGAGACACCCAGATATACATTAGCCAATATCAGCAGGGAATCTATGCATAAAATGCATGTAAAACCGGAGACTTCCTTGATCCGTCCTTACATCGTTTGTGCTGTTTTGAGAGACATGACTTTTGATGAAGCAATTTATGCGAGTTTCATTGATCTGCAAGAGAAACTTCATCAGAACATATGTCGACGAAGAAGTCTTGTTGCCATTGGAACACACGACCTGGATACACTTGAAGGCCCTTTCACCTATGAGGCTTTGCCACCAACAGCTATAAACTTTGTGCCACTGAAACAGACGAAGAATTTCAGAGCTGATGAGCTAATGGAGTTCTATAAATCAGATTTAAAGCTGAGGAAGTACTTGCCCATAATAGAAAAATCACCTGTATATCCCATTTTGTATGACCGCAACAGAACTGTTTTGTCTTTGCCACCAATTATCAATGGTGCACATTCGGCTATTACATTGAAGACAAAGAATGTGTTTATTGAATGCACCGCGACTGATCTGACAAAGGCAAATATTGTCTTGAATACTATGGTAACTATGTTTTCAACGCTGTGCAAAAAGAAGTTTGAAATTGAACCAGTTGAAGTGATATATCCGGATGGCAGGTCGTGTATTTATCCAGAGCTATCTCTCTACAATATGGAAGTTTCTCTGTCTTATATCAATAAGTGTATTGGAGTCTCATTGGAGGCAGAAGAGGTTATCAATTTGTTAAATAGGATGCAATTGCACGCTGAACAGTCAGTATCTGGTGACAAGTCTAGTATAACTATATCTGTGCCCCCAACAAGGAGTGATGTGCTTCACCCATGTGACGTCATGGAGGATGTTGCTATTGCTTATGGGTATAATAACATCTCAAAGAGTAAACCAGCATCTTTGCAGCCTCTACCATTAAATGAGTTCAGTGACCTTATTAGAGGAGAGATTGCAATGAGTGGGTTCACGGAGGTACTTACGTGGATCCTATGTTCTTATAAAGAGAACTTCACCATGCTAAAGCGTGAAGATGATAAATCTACTGCTGTTGTCATTGGAAATCCTCGTTCAACTGATTTTGAGGTTGTACGAACCAGTCTTATGCCTGGTCTTTTGAAAATTGTTGGACACAATAAGGACCACCCAAAGCCCATAAAGATATTTGAAGTTGGTGATGTATCATTGCTGGATGATGCAAAAGATGTTGGTGCAAGAAATCATCGTCATCTTGCTGCTCTATATTGCGGTGCCAATTCTGGATTTGAATTGATTCACGGTTTGGTTGACCGAATTATGGAAGTTGTAGGAGCTCCTTTTGTTTCAGTTGGCGATGAAACTGGAACCCAGAGTTTCTTACTGGTAGACAAGCTCACATCATTTATAAAGGAAAGAAAATTGGCACGTTTGGCATTGTTCATCCCGAGGTTTTGGATAACTTCGACATTCCTGATCCATGTTCCTTTGTTGAACTTAGCATCGAGATCTTTTTGTAGTATTCATTCCACAGTCGATGAGACGTGTTTCTGGGTTTTCCTCAGCTAA 3762 41.6 MAQDTSPSIESPRRRSGLLRDQVQLVRKKDSNRYEILPIQDPLSFEKGFFIVIRACQLLSQKNDGIILVGVAGPSGAGKTVFTEKVLNFIPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENINGLREGKPVQVPIYDFKTSSRVGYRTLEVPESRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQVSETVYPMYKAFIEPDLQTAHIRIINKFNPFTGFQNPTYILKSTKAVPVDQIKGVISENHKESTEETYDIYLLPPGEDPEVCQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFSDDRVCIKIDWLEQLNRKYIQVQGKDRVHVKCVAEQLGLDGSYIPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDESLSSPKEALSRASADRRNKYLNRGLSQSFSNRRDKTLSKLTKLAVNNRRFDVRAPDSPAVVSNQGAITQLSEQISTLSERMDEFTTRIEELNSKICTRKISASQQNLVSQSDACNNGSGATSIFISGLSNGALTGSLLPHSSSSSQLAKESPLLEEIQNIARAQRQIILQVDNLSNLLREHLSDRGRRGKADDEGRWRITDLESISTPLLLTLAVEKSTMPTVSVGRDLLYAAIGRTYTQEEFEELCFSFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRIFNKQEETPRYTLANISRESMHKMHVKPETSLIRPYIVCAVLRDMTFDEAIYASFIDLQEKLHQNICRRRSLVAIGTHDLDTLEGPFTYEALPPTAINFVPLKQTKNFRADELMEFYKSDLKLRKYLPIIEKSPVYPILYDRNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKANIVLNTMVTMFSTLCKKKFEIEPVEVIYPDGRSCIYPELSLYNMEVSLSYINKCIGVSLEAEEVINLLNRMQLHAEQSVSGDKSSITISVPPTRSDVLHPCDVMEDVAIAYGYNNISKSKPASLQPLPLNEFSDLIRGEIAMSGFTEVLTWILCSYKENFTMLKREDDKSTAVVIGNPRSTDFEVVRTSLMPGLLKIVGHNKDHPKPIKIFEVGDVSLLDDAKDVGARNHRHLAALYCGANSGFELIHGLVDRIMEVVGAPFVSVGDETGTQSFLLVDKLTSFIKERKLARLALFIPRFWITSTFLIHVPLLNLASRSFCSIHSTVDETCFWVFLS 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27723198 27738312 - CcPI632755_06g017220.1 Cco06g1722 182322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1722 1253 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Cco06g1722 1253 Pfam Phosphoribulokinase / Uridine kinase family 69 237 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Cco06g1722 1253 Gene3D - 654 742 - -
Cco06g1722 1253 CDD UMPK_like 68 240 - -
Cco06g1722 1253 SMART B5_2 958 1030 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cco06g1722 1253 Pfam B3/4 domain 791 914 IPR005146 GO:0003723(InterPro)|GO:0004826(InterPro)
Cco06g1722 1253 SUPERFAMILY CYTH-like phosphatases 262 408 IPR033469 -
Cco06g1722 1253 SUPERFAMILY Putative DNA-binding domain 960 1034 IPR009061 -
Cco06g1722 1253 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 654 1189 IPR045060 GO:0004826(InterPro)|GO:0004826(PANTHER)|GO:0006432(PANTHER)|GO:0006432(InterPro)|GO:0009328(PANTHER)
Cco06g1722 1253 FunFam Phenylalanine--tRNA ligase beta subunit 654 742 - -
Cco06g1722 1253 SMART B3_4_2 771 933 IPR005146 GO:0003723(InterPro)|GO:0004826(InterPro)
Cco06g1722 1253 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 1043 1177 IPR041616 -
Cco06g1722 1253 Gene3D - 753 957 IPR020825 -
Cco06g1722 1253 FunFam phenylalanine--tRNA ligase beta subunit 1044 1208 - -
Cco06g1722 1253 SUPERFAMILY Class II aaRS and biotin synthetases 1027 1180 IPR045864 -
Cco06g1722 1253 ProSiteProfiles B5 domain profile. 956 1035 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cco06g1722 1253 PRINTS Uridine kinase signature 66 83 - -
Cco06g1722 1253 PRINTS Uridine kinase signature 189 199 - -
Cco06g1722 1253 PRINTS Uridine kinase signature 225 238 - -
Cco06g1722 1253 PRINTS Uridine kinase signature 133 148 - -
Cco06g1722 1253 Pfam tRNA synthetase B5 domain 961 1030 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cco06g1722 1253 SUPERFAMILY Putative DNA-binding domain 658 746 IPR009061 -
Cco06g1722 1253 Gene3D - 959 1033 - -
Cco06g1722 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 237 IPR027417 -
Cco06g1722 1253 Pfam Phe-tRNA synthetase beta subunit B1 domain 654 742 IPR040659 -
Cco06g1722 1253 FunFam Phenylalanyl-tRNA synthetase, beta subunit 959 1033 - -
Cco06g1722 1253 Pfam CYTH domain 270 405 IPR023577 -
Cco06g1722 1253 Gene3D - 67 247 IPR027417 -
Cco06g1722 1253 NCBIfam phenylalanine--tRNA ligase subunit beta 654 1178 IPR004531 GO:0000166(InterPro)|GO:0004826(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006432(InterPro)
Cco06g1722 1253 Coils Coil 501 528 - -
Cco06g1722 1253 Gene3D Bira Bifunctional Protein; Domain 2 1044 1202 IPR045864 -
Cco06g1722 1253 FunFam phenylalanine--tRNA ligase beta subunit 753 957 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1722 K00876 - - csv:101210506 1210.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0146 Cco-Chr11:1544998 Cco06g1722 Cco-Chr6:27723198 5.30E-55 transposed
Cco05g2596 Cco-Chr5:34222833 Cco06g1722 Cco-Chr6:27723198 1.50E-256 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39