Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1724 ATGGGCTGCACATTTTCGGGATTGAATGCTTTCTACGATGCTGTGAATAGCGGTGGAGATGTGTGGATCAATGAGAACAGATTCAGGATCGTTAGGCAGCTCGGTGAAGGTGGCTTTGCTTATGTCTTCCTCGTCAAGGAGGTGCTCGCTGATTCATCTTCAGACGCTGTTCGCACTGGTTTGCGCAAGAAATTCAAGGACTCCACTCATCTTTCTGACGATGGTTCGTATGCATTGAAAAAGGTGCTCATTCAGAATAATGAACAACTGGAACTGGTGAAAGAGGAGATTCACGTTTCATCTCTGTTTAGTCATCCCAATCTACTTCCTCTTCTTGATCATGCTATAATAGCTACTAAGCCTACCCAAGAACGATCTTGGAACCATGAAGCATACTTACTATTTCCAGTACATTTGGATGGAACATTATTGGACAATGCAAAGACCATGAAAGCAAAAAAGGAGTTCTTCTCAACATCAGATGTTTTGCAAATATTTCGACAGCTTTGTGCGGGTCTCAAGCACATGCACAATTTTGATCCCCCATATGCACACAATGACATCAAACCGGGCAATGTTCTCATAACTCGTAGAAAGGGCCAGCCTCCTCTTGCTATATTGATGGATTTTGGAAGTGCCCGACCTGCAAGGAGGCAAATTGGCTCCCGTTCAGAAGCACTGCAGTTGCAGGAATGGGCATCTGAACACTGTTCTGCTCCTTTCCGGGCTCCTGAGTTGTGGGATTGTGCAAGCCATGCAGATATTGACGAAAGAACTGATATTTGGTCTTTAGGATGCACGCTGTATGCAATAATGTATGGGGTATCCCCATTTGAATATGCGCTTGGGGAATCTGGAGGAAGCTTACAGTTAGCAATCGTAAATGTTCAGATCAAGTGGCCGGCTGGACCAACTCCTCCATATCCTGATGCTCTTCATCAGTTTGTGAAGTGGATGCTTCAGCCACAGGCTGCAGTCCGTCCGCGCATTGATGATATTTTATATTACATTGAGCTACCTGGCTTTTCATGGCTGACGCACCTGGCATTACTTGCTGTGGAAATGAAGCAGGAGCAGTCATTTGTGGTTCCACCATTCAGGCATCGTGGTTACATGATAGCCGCCGATGGAAAGCTGGGGTCCCGTATACTTGAATTTGTCTTTAATGAATTGTTGATGTACAGGTCTCTATTGATGACTTCAGGTGCGTTCTTCAAGGAGAACATATTTGATTAA 1236 44.9 MGCTFSGLNAFYDAVNSGGDVWINENRFRIVRQLGEGGFAYVFLVKEVLADSSSDAVRTGLRKKFKDSTHLSDDGSYALKKVLIQNNEQLELVKEEIHVSSLFSHPNLLPLLDHAIIATKPTQERSWNHEAYLLFPVHLDGTLLDNAKTMKAKKEFFSTSDVLQIFRQLCAGLKHMHNFDPPYAHNDIKPGNVLITRRKGQPPLAILMDFGSARPARRQIGSRSEALQLQEWASEHCSAPFRAPELWDCASHADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNVQIKWPAGPTPPYPDALHQFVKWMLQPQAAVRPRIDDILYYIELPGFSWLTHLALLAVEMKQEQSFVVPPFRHRGYMIAADGKLGSRILEFVFNELLMYRSLLMTSGAFFKENIFD 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27751066 27755042 + CcPI632755_06g017240.1 Cco06g1724 182324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1724 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1724 411 SUPERFAMILY Protein kinase-like (PK-like) 17 356 IPR011009 -
Cco06g1724 411 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 337 IPR052239 GO:0004674(PANTHER)|GO:0005737(PANTHER)
Cco06g1724 411 CDD STKc_16 27 339 - -
Cco06g1724 411 Pfam Protein kinase domain 69 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1724 411 Gene3D Transferase(Phosphotransferase) domain 1 14 340 - -
Cco06g1724 411 SMART serkin_6 28 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1724 411 ProSiteProfiles Protein kinase domain profile. 28 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1724 K08856 - - csv:101210993 667.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1724 Cco-Chr6:27751066 Cco05g2410 Cco-Chr5:32603419 2.30E-07 dispersed
Cco10g1249 Cco-Chr10:25266009 Cco06g1724 Cco-Chr6:27751066 5.50E-30 transposed
Cco01g1737 Cco-Chr1:30064708 Cco06g1724 Cco-Chr6:27751066 3.60E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g404 . . . . . . . . . . . . . Car11g00217 Sed12g2040 . Cpe04g01433 Bhi02g00042 Tan09g1985 Cmetu02g1376 . Hepe09g0304 . . Cla06g01511 Cam06g1666 Cec06g1727 Cco06g1724 Clacu06g1632 Cmu06g1581 Cre06g2391 . . . Cone19ag0023 . . . . . . . . . . . . . . Cmo11g00242 . . . . . . . . . . . . . . . . . . . . . Csa01g00317 Chy02g02424 Cme02g01793
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002165 2 3 1 2 1 2 2 2 2 2 1 2 2 2 2 4 2 2 4 2 2 2 2 2 3 1 2 5 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86942 PF00069 Pkinase 1.10E-28 CL0016 Cco PK