Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1737 ATGCAAGACATACAGTCGATCGCCGGAGGAAGTCGCTTGTTCGGCGGCGGTGGCGGCGGAGACCGTCGTCTACGGCCACACCTCCACCACCATCAAAACCACCAAGCCTTGAAGTGTCCGAGGTGTGATTCTCTCAATACGAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGTCGTTACTGGACGAAAGGCGGTGTTCTCCGTAACGTCCCCGTCGGCGGTGGCTGCCGGAAAACCAAGCGCTCTTCCTCCTCTAAGTCTAAGGTCAACTCAGACGCAGCGGCGACTCCTCCTCCACCTCCTTCCCTCCGTGAACGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCCAGTTTAACTGCCACAACTACTACCGCTGCTGCCGCAGCGGCGGCAGCGACTGAGGCCGTGTCGGCTCCGTCGTCTAATTCGGCCTCGACTTTATTGAACGTACAGGATACGAAATTGTTCCCTGGTTCGACTACAAATACAAACCCTAGTTTCGAAGGTACGGCGGCGGCGGCGATTTCGGACTGCGGAATTTTCTCGGAAATCGGTAGCTTCACGAGCTTGATCACATCGTCTAACGAGACATTGGCGTTTGGATTCGGTAACATGACGGACGTGACGGCGTTTACGATGAATAATCATCAGGCGTTGGCGAATCAATGGCCGCCGCCGCAGAGAATGATGAACGTTAACGATGAACTGAAGATGCAGGAGATCACAGACGGCGGAGGAGGAGGGTACATGGATCAGACGGTTCAGGTGTATCCATCAGGGCTTCAGAATAACAGATCAAACAACATTGGATTTGGTCCGTTGGATTGGCAATCAAACGGAGATCATCAAGTTCTGTTTGATCTCCCCAACGCCGTGGATCAAGCATACTGGAGTCAAAATCAATGGAGCGATCAAGACCAGCCTAATCTGTACCTTCCGTAA 975 52.0 MQDIQSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKVNSDAAATPPPPPSLRERKSTSHSSSESSSLTATTTTAAAAAAAATEAVSAPSSNSASTLLNVQDTKLFPGSTTNTNPSFEGTAAAAISDCGIFSEIGSFTSLITSSNETLAFGFGNMTDVTAFTMNNHQALANQWPPPQRMMNVNDELKMQEITDGGGGGYMDQTVQVYPSGLQNNRSNNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDQDQPNLYLP 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27874979 27875953 + CcPI632755_06g017370.1 Cco06g1737 182337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1737 324 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco06g1737 324 MobiDBLite consensus disorder prediction 1 26 - -
Cco06g1737 324 MobiDBLite consensus disorder prediction 81 131 - -
Cco06g1737 324 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco06g1737 324 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco06g1737 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 200 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1737 Cco-Chr6:27874979 Cco10g0781 Cco-Chr10:13711640 9.30E-28 dispersed
Cco06g1737 Cco-Chr6:27874979 Cco03g0254 Cco-Chr3:2777942 6.50E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59539 PF02701 zf-Dof 4.40E-33 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1737 - - - 0.0